Gardnerella vaginalis HMP9231: HMPREF9231_1172
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Entry
HMPREF9231_1172 CDS
T01939
Symbol
radA
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_1172 (radA)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF9231_1172 (radA)
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Gene cluster
GFIT
Motif
Pfam:
AAA_25
Zn_ribbon_LapB
ATPase
DnaB_C
ChlI
ABC_tran
AAA_22
Rad51
AAA_16
SLFN-g3_helicase
Lon_C
NACHT
TniB
EAD2
AAA_29
AAA
NTPase_1
nSTAND3
AAA_24
MMR_HSR1
PAXNEB
Motif
Other DBs
NCBI-ProteinID:
AEF32001
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Position
1422986..1424431
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AA seq
481 aa
AA seq
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MAAKSTTYYLCSECGWSGSKWYGRCPECGEWGTLNEFHESKATSGVSRASTRSRNAKNNI
STITNLDSSVDAQPISEITADNGMRIHTGFSEFDRVLGGGLVPGSVTLIAGEPGIGKSTL
LLETAGKIAKNCNGSAKNTAEYTKNLVLYISGEESKSQVKLRASRINAISQNLLLASTTD
LNTALALIEKYKPTLAIVDSAQTIVSSDVEGITGGSTQVREVASALIDVAKTCDIPILLV
GHVTKDGSIAGPRTLEHLVDTVCQFEGDSQTALRMLRAVKNRFGPTDEVGCFDMSGDGIE
EVPDPSGLFLSSNGDCKNEGTCVTFTLEGHRSIPIEIQALVTDSVLPAPRRAVSGVDTNR
IAMLTAVLYRHGGLNLLSKDIYVSTIAGAKAKEPACDLAIVASLASAAKNKAVLPLTCAI
GEISLTGQIRPASRMEPRIREAARIGYKRATVCNMRKKISIPGIDIIEVENLKEALNALG
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaatctactacttactacttgtgctccgaatgcggttggagtggttcaaaa
tggtatggtcgctgtccagaatgcggcgaatggggaacattaaacgagtttcacgagtct
aaagctacaagcggagtttcacgagcctccacaagatctagaaatgcaaaaaataacatt
tctacaataacaaatcttgattctagcgtagatgctcagccaatcagtgaaattacagca
gataatggcatgcgaatccacacaggatttagcgaatttgaccgcgttttaggaggaggg
cttgttccaggatcagtcacgcttatagcaggcgaaccaggaatcggaaaatctactcta
cttttagaaacagcaggaaaaattgccaagaattgcaacggatctgcgaaaaacactgcc
gaatacacaaaaaatttagtcctgtacatttctggcgaagaatcaaagtcgcaagtaaaa
ttgcgcgcatcacgcataaatgccataagtcaaaatcttcttcttgcgtctacaacagac
ttaaacacagctttagcgctaatcgaaaaatataagccaactcttgcaattgtagattcg
gcacaaactattgtttctagcgatgttgaaggaattacaggaggctccactcaagttcga
gaagtagctagcgcgcttatagacgttgctaaaacttgcgatattccaattcttcttgtt
ggacacgttacaaaagacggctcgattgcaggtcctcgcacgcttgaacatcttgtagac
actgtttgccaatttgaaggagatagtcaaaccgcattacgcatgcttcgcgctgttaaa
aatcgttttggacctacagacgaagttggctgcttcgacatgagtggcgatggtattgaa
gaggttccagatccttctgggcttttcctgtcttctaatggagattgtaaaaatgaagga
acgtgcgtaacttttactttagaaggacacagaagcatacctattgaaattcaggctctt
gttacagattcggttctgccagcccctagacgcgcagtttctggagtagacacaaacaga
attgccatgcttaccgctgttttatatagacatggtggattaaatcttttgtctaaagat
atttacgtttctacgattgctggagctaaggcgaaagaacctgcttgcgatttagcaata
gtggcaagtttggcgagcgcagccaaaaataaggcagtcttacctttaacttgcgcaatt
ggtgagattagtcttactggtcaaattcgtccagcttctagaatggaacctagaattaga
gaagcagctaggatcggctataagcgtgcgaccgtgtgtaatatgcgaaagaaaattagc
attcccggtattgacataatcgaagtagagaatttaaaagaagctttgaacgcacttgga
ttatag
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