Gardnerella vaginalis HMP9231: HMPREF9231_1209
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Entry
HMPREF9231_1209 CDS
T01939
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gvh03016
]
HMPREF9231_1209 (truB)
Enzymes [BR:
gvh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HMPREF9231_1209 (truB)
Transfer RNA biogenesis [BR:
gvh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HMPREF9231_1209 (truB)
Prokaryotic type
HMPREF9231_1209 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PseudoU_synth_2
TruB_C
DKCLD
Motif
Other DBs
NCBI-ProteinID:
AEF31129
LinkDB
All DBs
Position
complement(1464481..1465683)
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AA seq
400 aa
AA seq
DB search
MSSSQTSSSGILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNAT
RLLNYLLGHDKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIA
KNFTGHIMQTPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGA
KVVDVRASVSCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIR
TFTDKNGVTQTRAKAVVADKHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNR
VLSMFESAKLTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLE
TAEKSPATAGGSRAFSKLQEKNEKNINQIEAKPIVVFVQS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagtagttctcaaacatcatcttcaggcattttattagtagataagccgaaaggcgtt
accagccatgacgttgtgtcttgtgcaagaggattgttgcacactaaacgcgtaggtcat
gcgggaacgcttgacccaatggctacaggattgctgattcttggttttggtaacgccact
cgcttgcttaactatttgcttggtcacgataagacttatgaggctgtgattcgtcttggc
gaatcaaccaatacggatgatgcagatggtgatgtcgtttcaagtgttgatgatgaaaat
agcattctaaactctgcaaatactgatgagattcttaaagaattgcgttgcgtaatcgct
aagaattttactgggcacattatgcaaactccaacggctttttcggctattaaaataaac
ggtgtgcgtgcttatgacttagcgcgtgaaggtaaagatgttcatttagagccgagagaa
gttgttattcatgacttttcgctactggatgcgcgctttaatgttggtgtaagcggtgca
aaagttgttgatgtgcgtgcgagtgtttcttgttctagcggcacgtatattcgcgcactt
gctcgcgacttaggacgtgttcttggtgtaggaggacatttagtaagtcttaggagaact
cgaattggcgaattttcggtagaagatgatagggttcttaaacttgaaactaggattcgt
acatttacggacaagaatggcgttactcagactcgcgcaaaggctgttgtagctgacaaa
cacgatagtgtttctgactatttttctgacagtgtttctaacagttcggttgcttgcgac
ttatctggagattcttcttgcaaaaaatctgcacaaaaaaactatgatttacaaaatcgt
gttctaagtatgtttgaatccgcaaaattaaccatgcaaacagttgaaatcagcgaaaat
caggctaaagacttgcgttttggtagaaaaatagtgattcctgcgattagcgaaaaaaat
actattgcatacgtaaaagccgaaaaagatgagcaaaacgatgttgttgcagttctggaa
accgctgaaaagtcgccagcaaccgcagggggaagcagagcgttctccaagttacaagaa
aaaaatgaaaaaaatataaatcaaatagaagctaaacctattgtggtatttgtacaaagc
tag
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