Gardnerella vaginalis HMP9231: HMPREF9231_1219
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Entry
HMPREF9231_1219 CDS
T01939
Symbol
gpsI
Name
(GenBank) guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9231_1219 (gpsI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvh03019
]
HMPREF9231_1219 (gpsI)
03016 Transfer RNA biogenesis [BR:
gvh03016
]
HMPREF9231_1219 (gpsI)
Enzymes [BR:
gvh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HMPREF9231_1219 (gpsI)
Messenger RNA biogenesis [BR:
gvh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMPREF9231_1219 (gpsI)
Transfer RNA biogenesis [BR:
gvh03016
]
Prokaryotic type
tRNA degradation factors
HMPREF9231_1219 (gpsI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
MUG2_C
KH_5
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AEF31642
LinkDB
All DBs
Position
complement(1477629..1480373)
Genome browser
AA seq
914 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQ
VVETILAINPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKV
ICDAQNELKRIAAKETKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEI
KEGVRAAIAEEFTDMDDEEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAAALQQAHEARATILEVINECIDCPAEMSPFAPRIITTTIPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGET
FTGKVVKTTSFGAFVNLTPGSDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVD
ERGKISLAIPGFENQESSAPAPRENRGRAPREDRDDRDDRRSDRRRAPRDDRDDRGDRDE
RPRRRNVRDDHDSRYDDRNDRNDRSDRSDRYEDRSSRRDDRRDNRYDNNDFEDRPRRRAP
REDRYDDRDDRRDNRDDRHEDRSAHRNADRRGNDRNPRYAADDDHYDEYRASREERSERP
RRRIRRDFDPFDED
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
gtggagggtcccgaaattaaggctgtagaagccgttattgataatggttcatttggaaag
cgtacgctacgctttgaaactggtcgccttgctcagcaagcagacggtgctgttgccgca
tatttggatgatgattccatgattttgtcgacgacgactgcaggatctagcccaaaggaa
aattacgatttcttcccattaactgttgatgtggaagaaaaaatgtatgctgctggaaag
attccaggatctttcttccgcagagaaggacgcccgtcaaatgaggcaacacttgcgtgc
cgtattattgaccgcccattgcgcccattgttcccacacactttgcgtaacgaagtgcaa
gttgtggaaacgattttggcaattaatccagatgatgcatacgatgttattgctttgaat
gctgcatctgcatctactatgatttctggattgccgtttgaaggcccagtttctggcgtt
cgtttggctttgattgatggtcagtgggttgctttcccacgctggagtgagcgcgagcgt
gcagtatttgagattgttgtggctggtcgtgttattgaaaatggcgatgttgctattgca
atgattgaagctggcgctggcaagaatgcttggaatttgatttacaatgagggtcaaatc
aagccagatgaagaagttgtagctggtggtttggaagctgcaaagccttttattaaggtt
atttgcgacgctcagaatgagttgaagcgtattgcagctaaagaaaccaaggaattccag
ctgttcccagaatacactgacgaactttatgcaagaatcgatgagattgctcatgctgat
ttgaacgaggctctttctattgctgaaaagctcccacgccaagatcgcattgctgaaatt
aaggaaggcgtgcgtgctgcaatcgcagaagagtttactgatatggacgatgaggagaag
gaaaaggaacttggtaacgccttcaaggagttgcagcgccagattgttcgtcgtcgtatt
ttgacggaagattacagaattgatggtcgcggtttgcgcgatattcgtacgcttagtgca
gaagttgatattgttcctcgcgttcacggttctgcgctattccagcgtggtgaaacccag
attttgggcgtaactactttgaatatgcttaagatggagcagcaagtggatgcgctttct
ggtccgcagactaagcgctatatgcacaattacgaaatgcctccatattccactggtgaa
actggtcgcgttggatctccaaagcgtcgcgagattggtcatggtgctttggctgagaag
gctttggtgccagttttgccaagtcgtgaagagttcccatacgctattcgtcaggtgtct
gaagctattggttctaacggttccacttctatgggatctgtttgcgcgtctacgctttct
ttgcttgcagctggtgtgcctttgaaggctccagttgctggtattgctatgggcttggtt
tcgggagatgttgatggaaagcatatcttcaagactttgaccgatattctcggtgcagaa
gatgctttcggagatatggacttcaaggttgctggtacttccgagttcatcactgctttg
cagcttgacactaagcttgatggcattccagctgatattttggctgccgctttgcagcag
gctcacgaagctcgtgcaacgattcttgaagttatcaacgagtgcattgattgcccagct
gagatgagcccatttgctccacgcattatcacaactacgattcctgtagataagattggt
gaagtaatcggacctaagggcaagatgattaaccagattcaagaagaaactggtgccgag
attgccattgaagatgacggtactgtttatatttcttctgaaggcggcgaagctgctcag
aaggcgaaggaaatcatcgactctattgcaaatcctcgtattccaaaagctggtgaaact
tttactggcaaggttgttaagacaacgagctttggtgctttcgtaaacttgactcctgga
agtgacggattgctgcatatttctcagattcgtaaccttgctaatggcgagcgcattgat
actgttgaagatgtgcttaaggaaggcgataacgtagaagtaatcgtacaaagcgtggat
gagcgcggtaagatttctttggccattccaggttttgagaatcaggaatcttctgctcca
gcgcctcgcgaaaaccgtggtcgcgctcctcgcgaagatcgtgatgatagggatgatcgc
agaagcgatcgccgacgcgctccacgtgacgatagggatgataggggcgatagggatgag
cgccctcgccgccgtaatgttcgtgatgatcatgattcgcgttatgacgataggaatgat
cgaaacgatagaagcgatcgttctgaccgttatgaggatcgttcttccagaagggatgat
cgcagggataatcgttacgataacaacgattttgaagatcgtcctcgccgacgcgctcca
cgtgaagatcgttatgatgatagggatgatcgcagggataatcgcgatgatcgccatgaa
gataggtctgctcatcgcaatgccgatcgtcgtggaaacgaccgtaatccacgttacgca
gctgatgacgatcactatgatgagtatcgcgcgtctcgcgaagagcgttctgagcgccct
cgtcgtaggatccgtcgcgattttgacccatttgacgaggattaa
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