Gardnerella vaginalis HMP9231: HMPREF9231_1284
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Entry
HMPREF9231_1284 CDS
T01939
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_1284 (topA)
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_1284 (topA)
Enzymes [BR:
gvh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HMPREF9231_1284 (topA)
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF9231_1284 (topA)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF9231_1284 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
FAM209
Motif
Other DBs
NCBI-ProteinID:
AEF31969
LinkDB
All DBs
Position
complement(1565115..1567973)
Genome browser
AA seq
952 aa
AA seq
DB search
MTEQNKLVIVESPTKARKIGGYLGSGYTVMASVGHIRDLAQPSQVPAAKKAEFGKFGVDV
NNGFEPYYVVGADKKKTVSDLKAALAKSGELFLATDEDREGEAIAWHLVQALKPKVPVKR
MVFHEITKDAIQASLANTRNVDDHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFKKASYWDVCADLSANGVDFQARMTALNGERLAASKDFNSLGE
LQKTKGESALAHYLNEADACAIAQSLGAADFVVSSMDTKPYRRRPLPPFTTSTLQQTAGN
RLSMSSRQTMRAAQSLYENGYITYMRTDSVTLSKEAIFAARDCVKSSFGDEYLADSPKQY
ATTSAGAQEAHECIRPAGSTFRNPADLAGVLPADQLKLYTLIWQRTLASQMADATGFTAT
VKLDASAGSFGTANFQASGTVIEFAGFMKVFGGFSEDEQSKALPPMANGDVLKALRVSAD
GHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFAVI
KLLESNFPTYVDYAFTADMENGLDRIAHGEEAGKDWLYKFYFGDNGAVAGDFAMHEGLQK
QVDQLGEIDAREINTIDIGGGLHVRVGRYGPYLEDTKNLDEEGNARRASIPSTLAPDELT
EQVARDLIENNSDGPRVLGTDPQTGGSVEVRNGRFGAYVALVEASDEDESQASDDSAKTG
AKSSAKSKKSAKAKPKMASLFKTMDPATITLQDALRLLNLPRLVGIVEEVDEQGEVKRAK
IEANNGRYGPYLTKTYERADAGDSAAAVDAKPDNRSLASEDAIFSVTLDEAKELFAQPKY
AKRTRGAAKPPLRELGEDPESGKAVVIKDGFYGAYITDGVTNRTLPKQYTPESIEPQVAF
ELLAQKRAAGPVKRKRTAAKKTATKKTAAKKTAAKKPAAKKSTAKKSTSKVE
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcagaacaagcttgtcattgtggagtctcccactaaagcgcgtaaaataggc
ggatatcttggaagcggatacactgttatggcatccgttggccacattcgtgatttagca
cagccaagtcaggtgccagctgctaaaaaggcagaatttggcaagtttggcgtagatgta
aacaatggttttgagccatactatgttgttggcgcagataaaaagaaaacagtttcggat
ttaaaggctgcgctcgcaaagtcgggcgaattgttcctcgcaactgatgaggaccgcgaa
ggagaagcgattgcgtggcatcttgtgcaagcacttaagccaaaagtgccagtaaagcgc
atggtgtttcacgagattacaaaagatgcgattcaagcttcgcttgctaacacgcgaaac
gttgacgaccatatggttgatgcgcaagaaacacgccgcgtgttggatagattgtacggc
tacgagctttcgccagttttgtggcgtaaagtgggaccgggtctttctgctgggcgagtg
caatctgttgcaacgcgtttgattgttgagcgcgagcgcgagcgaatggcgtttaaaaag
gcgagctattgggatgtttgtgcggatttgagcgcaaatggcgttgatttccaagcgaga
atgacggctctaaatggagagcgtttggctgcctctaaagattttaattcgcttggcgag
cttcaaaaaactaagggcgaatctgctttagcgcactatttgaatgaggcagatgcttgt
gcgattgcacagagtcttggcgcggctgattttgttgtgagctcaatggacactaagccg
tatcgccgccgcccattgcctccgtttacaacttctactcttcaacagactgctggaaac
cgcttgtctatgagctctcgccaaactatgcgcgcggctcaatctttgtacgaaaacggt
tacataacctacatgcgtacggattctgtaacgctttctaaagaggcgatttttgcggcg
cgagattgcgttaagtctagttttggagacgagtatttagcggattctccaaaacagtat
gctacgacttctgcaggcgctcaggaagcgcacgagtgtattcgtcctgctggatctacg
tttagaaatcctgcggatttggctggcgttctccctgccgatcagcttaaactttatacg
cttatttggcagcgcactcttgcttctcaaatggcggatgctactggttttacagctaca
gttaagctagatgcttcggctggcagctttggaacggctaatttccaagcttctggaacc
gtgattgagtttgctggatttatgaaggtgtttggcggatttagcgaagacgagcagtct
aaggctttgcctcctatggctaatggcgatgttcttaaagctttgcgagttagcgcggat
ggtcatgaaactcagccgccagctcgctacacggaagcgtctttagttaaaacgcttgaa
gctaaggagattggtaggccgtctacttacgctagcattatttccacgattattgaccgc
ggatacgtgtatgagcgtgggcgcgcgttgattccaagctggcttgcttttgctgttatt
aagcttttggaatctaatttcccaacttacgttgactatgcgtttacggcggacatggaa
aatggtttggaccgcatagcacatggcgaggaagctggtaaagattggctttacaagttt
tactttggagataacggggcggttgctggcgactttgcaatgcatgaaggtttacaaaaa
caagttgatcagcttggcgagattgacgctcgagaaatcaacacgattgatattggcggc
ggattgcacgtgcgcgtaggcagatacggcccgtatttggaagatacgaagaatctagac
gaagagggcaatgcgcgcagagcttcgattccaagtactttggctccagacgagttgact
gagcaagttgcgcgagatttgattgagaacaactccgacggtccgcgcgttttgggtacg
gatccgcaaactggcggcagcgtagaagttaggaacgggcgttttggagcgtacgttgct
cttgttgaagcctcggatgaggatgagtcgcaagcatccgacgattctgctaaaactggc
gcaaagtcttctgcaaaatctaaaaagtctgctaaagctaagccaaaaatggcgtctttg
tttaaaacaatggaccctgcaacaataactttgcaagatgctttgcgacttttgaatttg
cctcgattggttggcattgtggaagaagttgatgagcaaggcgaagtaaagcgcgcgaag
attgaggcgaataatggtcgatatggaccttatttgactaagacttacgagcgcgcggat
gctggcgattcggcagcggctgtggatgccaagccagacaatcgttcgcttgcaagcgaa
gacgcgatttttagtgtgactttagacgaagccaaggagctttttgctcaaccgaagtat
gcaaagcgcactcgcggagccgcaaaaccgccgcttagggagcttggagaagatccagaa
agcggcaaagcagtggtaattaaagacggcttctacggagcttatattacagacggcgtt
acgaatcgcacgcttccaaagcagtacacgcctgagtcgattgagccacaggttgcgttt
gagcttttggcgcaaaagcgtgcggcagggcctgtaaagcgcaagagaactgctgcaaag
aagacggcaacaaagaagacggccgctaagaaaacggccgctaaaaagcctgctgcaaaa
aagagcacagcaaaaaagtccacgtctaaagtcgagtaa
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