Gardnerella vaginalis HMP9231: HMPREF9231_1397
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Entry
HMPREF9231_1397 CDS
T01939
Name
(GenBank) tRNA adenylyltransferase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9231_1397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvh03019
]
HMPREF9231_1397
Enzymes [BR:
gvh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HMPREF9231_1397
Messenger RNA biogenesis [BR:
gvh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HMPREF9231_1397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
HD
tRNA_NucTran2_2
DUF1657
Motif
Other DBs
NCBI-ProteinID:
AEF31190
LinkDB
All DBs
Position
complement(1710033..1711502)
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AA seq
489 aa
AA seq
DB search
MLEYSLIFVERVFPSVSVNFEVWPEAMELGRLFAKHNYELALVGGPVRDMLLHRTSHDLD
FCTSAKPEEFEHILRSWGHDGFWDMGRKFGTLGAVRRRKDGTEVKVEITTYRCDDYEPDS
RKPEVKYGDTLEGDLSRRDFTVNAMALRVPDLEFVDPFGGANDLAKGILRTPVDPRQSFD
DDPLRMMRAVRFVAQLGFTIEANTAEAILDMVSRLDIVSAERVRDEITKMLLSANPRAGI
EAMVESGIADRVLPEIPALRLEIDEHHRHKDVFEHTMMVLERAIALETDNEGAVPRPDLT
LRLAALLHDIGKPRTRKFEEGGKVSFHHHDVVGAKMTRKRMKALHFDHHIIDDVSELVNL
HLRFHGYVDEPWTDSAVRRYVKDSGHLYERLNRLTRADATTQNKRKSLMFEQAMDEMEER
VKELKKQEDFNAIRPDLDGNEIMQLLDLKPGPIVGKAYKHMLDYRLDNGPVDHDIAVEEL
KKWYSSLNK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgctggaatatagtttgatttttgttgaaagggtgtttccaagcgtgtctgtgaacttt
gaagtttggcctgaagccatggagttgggtagattattcgctaaacataattatgagctg
gctcttgtaggcggtcctgtacgagacatgttgttgcatagaacgtcgcacgatcttgat
ttttgcacttctgccaaaccagaagaatttgagcatattcttaggagttgggggcacgat
ggcttttgggatatgggtcgaaaatttggcacgcttggagctgtgcgtcgcagaaaagac
ggaacagaagtaaaagtcgagataacaacataccgatgtgatgactatgagccagattct
aggaaaccagaagtaaaatatggcgatactttggaaggtgatctttctaggcgtgatttt
actgtgaacgcaatggctttgcgtgttccagatttggaatttgtagatccattcggtgga
gcgaatgatttagcaaaaggtattctgcgtactccagtagatcctcgtcaatcttttgac
gatgatcctttaagaatgatgcgtgctgttcgttttgttgctcaacttggtttcactatt
gaagcaaatactgcagaagctattttagatatggtttctaggttggatattgtttctgca
gagcgcgtccgcgatgaaataacaaaaatgctgctttctgctaatcctcgtgctggtatt
gaagctatggtcgagtctggtattgcagatagggttttgccagaaattcctgcattgcgc
ttagaaattgacgaacatcacaggcataaggatgtttttgagcatacaatgatggttctt
gaacgagcaatagcattagaaacagataacgaaggcgcggttcctagacccgatttgact
ttgagacttgctgctcttttgcatgatattggcaaacctcgtactagaaaatttgaagaa
ggcggaaaagtaagtttccaccatcatgatgttgttggagctaaaatgactcgcaaacgc
atgaaagctcttcattttgatcatcatattattgatgatgtaagcgagcttgtgaatctg
catttgcgattccatggatatgttgacgagccttggactgattctgctgtacgcagatat
gttaaggattcaggacacttgtatgagagattaaatcgtctaacccgcgcggatgcaact
acacagaacaagcgtaaatcgctgatgtttgagcaggctatggatgagatggaagagcga
gttaaagagcttaaaaagcaggaagattttaacgcgattcgtccggacctagatggcaat
gagattatgcaattgcttgatttgaaacctggtcctattgttggtaaagcatataagcat
atgttggattatcgccttgataacggtccagtagatcacgatattgctgttgaggaatta
aagaaatggtattccagcttaaataagtag
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