Gloeobacter violaceus: gll2508
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Entry
gll2508 CDS
T00148
Name
(GenBank) ATP-dependent RNA helicase DeaD homolog; ORF_ID:gll2508
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gvi
Gloeobacter violaceus
Pathway
gvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
gll2508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvi03019
]
gll2508
03009 Ribosome biogenesis [BR:
gvi03009
]
gll2508
Enzymes [BR:
gvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
gll2508
Messenger RNA biogenesis [BR:
gvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
gll2508
Ribosome biogenesis [BR:
gvi03009
]
Prokaryotic type
rRNA helicases
gll2508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Cas3-like_C_2
AAA_22
Flavi_DEAD
P-loop_SecA
adh_short
Helicase_RecD
TetR_C_7
DUF7117
Motif
Other DBs
NCBI-ProteinID:
BAC90449
UniProt:
Q7NHM7
LinkDB
All DBs
Position
complement(2667088..2668401)
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AA seq
437 aa
AA seq
DB search
MATAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLP
LVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRA
GAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLV
FFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAED
PASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDV
AARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERAT
GSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDPSLVLYREVVGQLREEFDLGDIA
ATFLKLAQQRPGSTGSG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcattttcggcactcgggctcagcgagtccgtggtgaaggcgctcgacgaa
ctcggtttcgagcagccgactccgattcaactgaagagcatcccctttttgctggacggc
cgcgacctgctcgcccaggcccagaccggcaccggcaagacggcggctttcggcctgccg
ctggtcgaccgttcagacccgcaggacgcccgggtgcaggcgttggtgcttgcccccacg
cgcgaactggccgtgcaggtgtgtgaggccattcatacctacagcaagcattcgggcgtg
cgggtgctgcccatctacggcggccagcccatcgatcgccagatgcgtcgtctgcgcgcc
ggtgcacagatcgtggtgggcacccccgggcgggtgctcgatctgatgcggcgcggcagt
ctcgatctgagcgcattgcgcacgctggtgctcgacgaagccgaccagatgctggatatg
ggctttatcgaggaagtccagaccattcttgatgcggctcccccagagcggcaactggtc
ttcttctcagccacactgcctgcgagtatccgcaaacttgccgcccgccacctgcgcacg
ccgatgacgctcaccatgcccgccgaggagcgcgacaccccggccatcgcccagcgggtc
tacttcgtcaacttcaaaaaccgcgcccaggctctaacccgcgtgctcgcggccgaagat
ccggcctcggccttgatttttacccgcaccaaacaggcggcggacgaactggccgaacaa
ctgcaggacgacggtcaccgcgccgaggccctgcacggggatctcaatcagagtgcgcgc
gaggcggtgctggggcgctttcgccgccagcagctcaacgtggtggtggcgaccgacgtt
gccgcccgcggcctcgatatcgccgatctcagccacgtcatcaactacgacatgccccag
gacggcgaatcgtacatccaccgcatcggccgcaccggccgggcggggcgcaccggggtg
gcgatcagcttcgctctgcccaccgaccgctatcggttgcggctgattgaacgggcgacc
ggctcgacgctcgttccagccaagattccctcagcgggagaaatccaggtgcggcgcacc
gaacgcctcgtcgagcagttgcgcaggcagttgcaggcggacgagagtgatccgagcctc
gtactttaccgcgaggtcgtgggacagttgcgcgaggaattcgacttgggcgatattgcc
gccacgttcctcaagctcgctcagcagcggcccggcagtaccgggagcggctga
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