Gloeobacter violaceus: glr1506
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Entry
glr1506 CDS
T00148
Symbol
rne
Name
(GenBank) ORF_ID:glr1506
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gvi
Gloeobacter violaceus
Pathway
gvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
glr1506 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvi03019
]
glr1506 (rne)
03009 Ribosome biogenesis [BR:
gvi03009
]
glr1506 (rne)
Enzymes [BR:
gvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
glr1506 (rne)
Messenger RNA biogenesis [BR:
gvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
glr1506 (rne)
Ribosome biogenesis [BR:
gvi03009
]
Prokaryotic type
rRNA processing factors
glr1506 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAC89447
UniProt:
Q7NKH2
LinkDB
All DBs
Position
1620272..1622260
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AA seq
662 aa
AA seq
DB search
MPKQIIIAEQYRLAAVFAEDQIQELIVASGNHQVGDIYLGIVENVLPSIDAAFVNIGNPE
RNGFIHVTDLGQIRLRRSSASISELVTPQQKVLVQVMKEPTGNKGPRLTGNVSLPGRFLV
LMPFGRGVNLSRRIRDDDERNRLRALAVLIKPPGMGLLVRTEAAGMDEQGVLEDLESLLK
QWEKIQKQTAETRAPALLNRDEDFIQRILRDAYGAQVNRIVVDSHVGVKRVKQHLLNWNG
GRMPQGVYVEHHREPSSILDYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATSRETVLWTNCEAATEIARQLRLRNIAGIIIIDFIDMDARRDQLQVLEHFSKAL
KADKSRPQIAQLTELGLVEITRKRQGQSIYEIFGKPCPTCDGLGITTHLPGTRHEPGTEA
LPTFAPSAEELEGFEGEGFAGAGAGGEYEEEESSDLDLTAHPVFRNDRRRLPMERRPAAP
PPAGNGAPGGTAGGRNRRRRGRGGNGRGGPEEGLGRPAIETGEPVPGASPPSPAARAPEA
EPAEAAPSMPGYGGYEDRHDEGAQPTQPPIEAPEMPIDHIPAAEQEVLAYMGLPAELLSG
PAITSGNTSILSVRPPSPDKPEDEGGEEGEGDPRRRRRRRTTRSKAPEAQNTPEPVPANP
EE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcaaatcatcatcgcggaacaataccgtctggcggcggtatttgcagaagat
caaattcaagaactcatcgtcgcctccggcaaccaccaggtcggagacatttacctgggc
atcgttgagaacgtgctgcccagcatcgacgccgctttcgtcaacatcggcaatcccgaa
cgcaacggcttcatccacgtcaccgacctcggtcagatccggttgcgccgctcctccgct
tcgattagcgaactggtcaccccccagcaaaaagtgctcgtccaggtgatgaaggagccc
accggcaacaaaggtccgcgcttgaccggcaacgtcagcctgccgggacgctttttggtg
ttgatgcccttcggccggggcgtcaacctctcgcggcgcatccgcgacgacgacgagcgc
aatcgcctgcgtgccctggcggtgctcatcaaacccccgggcatgggcctgctggtgcgt
accgaggcggccggcatggacgagcagggcgttctcgaagatctcgaaagcctgctcaag
cagtgggagaaaattcagaagcagaccgccgagacccgggctccggccttgctcaaccgc
gacgaggactttattcaacgcatcttgcgcgacgcctacggcgcccaggtcaaccgcatc
gtggtggattcccacgtcggggtcaagcgtgtcaagcagcacctgctcaactggaacggc
gggcgcatgccccagggcgtctacgtcgagcaccaccgcgagcccagttcgattctcgat
tactttcgggtcaacgcggcaattcgcgaggcgctgcggccccgcgtcgatttgccctcc
ggcggttacatcatcatcgagcccaccgaggcgctcacggtgatcgacgtcaactccggt
tccttcacccgctcggcgacttcacgcgagacggtgctgtggaccaactgcgaggcggcc
accgaaatcgcccgccaactgcggttgcgcaacatcgcgggcatcatcatcatcgacttt
atcgacatggacgcgcgccgcgaccagttgcaggtgctggagcacttctccaaggcgctc
aaagccgacaagtcgcgcccgcagatcgctcagctcaccgaactgggccttgtcgagatc
acccgcaagcgtcagggccagagcatctacgagatcttcggcaagccctgccccacctgc
gacggcctcggcatcaccacccacctgcccggcactcgccacgagccaggcaccgaggct
ctacccacctttgccccgtccgccgaggaactggaaggcttcgaaggtgaaggatttgcc
ggggccggggccggcggcgagtacgaagaggaagaatcgtcggatctcgacctcacggcc
catccggtttttcgcaacgaccggcgccgcctgccgatggagcgccgaccggcggcgcca
ccgccggccggcaacggtgccccgggcggaaccgccggtggacgcaaccgccgccgccgc
ggccggggcggcaacggccgcggcgggccggaggagggcctgggacgtcccgcgatcgag
acgggcgaaccggttcccggcgcgtccccgccttcgccggccgcccgtgcgcccgaggcc
gaaccggcggaggcagcgccttcgatgccaggctacggcggctacgaagatcgccacgac
gaaggcgcccaaccgacgcagcctccgatcgaagcgcccgagatgcccatcgaccacatc
cctgccgccgagcaggaagtgctcgcctacatggggctgcccgccgagctgttgagcggt
ccggccatcacctcgggcaacacctcgatcctctcggtccggccgcccagtcccgacaaa
cccgaagacgaagggggcgaggagggcgagggcgatccgcgccgccgccgccgccgccgc
accacccgcagcaaagcccccgaggcgcagaacaccccggagccggttcccgccaatccg
gaggaataa
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