KEGG   PATHWAY: gvr03030
Entry
gvr03030                    Pathway                                
Name
DNA replication - Galeopterus variegatus (Sunda flying lemur)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
gvr03030  DNA replication
gvr03030

Organism
Galeopterus variegatus (Sunda flying lemur) [GN:gvr]
Gene
103584818  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
103585268  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
103585865  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
103585989  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
103586065  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
103587091  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
103587262  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
103588954  RFC2; replication factor C subunit 2 [KO:K10755]
103589977  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
103590014  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
103592683  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
103592732  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
103592959  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
103593084  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
103594339  RPA4; replication protein A 30 kDa subunit [KO:K10741]
103595327  RNASEH2C; ribonuclease H2 subunit C isoform X1 [KO:K10745]
103596350  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
103596616  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
103597778  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
103598075  RFC1; replication factor C subunit 1 [KO:K10754]
103598181  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
103598677  RFC4; replication factor C subunit 4 [KO:K10755]
103600448  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
103600661  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
103604435  PCNA; proliferating cell nuclear antigen [KO:K04802]
103604814  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
103604822  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
103604870  [KO:K02685]
103605482  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
103605510  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
103606080  [KO:K04802]
103606981  RPA3; replication protein A 14 kDa subunit [KO:K10740]
103607443  [KO:K02212] [EC:5.6.2.3]
103607808  RFC3; replication factor C subunit 3 [KO:K10756]
103608723  RFC5; replication factor C subunit 5 [KO:K10756]
103609272  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
103610598  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system