Galeopterus variegatus (Sunda flying lemur): 103596525
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Entry
103596525 CDS
T08727
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gvr
Galeopterus variegatus (Sunda flying lemur)
Pathway
gvr03013
Nucleocytoplasmic transport
gvr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gvr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103596525 (UPF1)
03015 mRNA surveillance pathway
103596525 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvr03019
]
103596525 (UPF1)
Enzymes [BR:
gvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103596525 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103596525 (UPF1)
Messenger RNA biogenesis [BR:
gvr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103596525 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103596525 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103596525
NCBI-ProteinID:
XP_008578388
LinkDB
All DBs
Position
Unknown
AA seq
1114 aa
AA seq
DB search
MEGSAECESPKLETARSSVGKWLHGLTASSGLMLIGSWSHLKELSPPEGWALHWKSETVD
KPCPLLSALEPFWVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACS
YCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECY
NCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVK
IPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQN
IFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICL
RYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQ
SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ
RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL
CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAER
ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC
QLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNG
VTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG
AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA
NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLN
NLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHD
QIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNR
FGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggagggctctgccgaatgtgagagccccaaactggaaacagcccgctccagtgtaggc
aagtggcttcatggtctgactgcctcgtcaggcctcatgctcattggctcctggtcacac
ctcaaggagctgtccccacctgagggctgggccctgcactggaagtcagagactgtggac
aagccctgcccactgctttcagctttggagcccttctgggttggacccgagggcatcctg
cagaatggggctgtggatgacagtgtggccaagaccagccagttgttggccgagttgaac
ttcgaggaggatgaagaagacacctattacacgaaggacctccccatacatgcctgcagt
tactgtggaatacacgatcctgcttgtgtagtttactgtaacaccagcaagaagtggttc
tgtaacggacgaggaaatacttctggcagccacattgtaaatcacctcgtgagggcgaaa
tgcaaagaggtgactctgcacaaggacgggcccctgggggagacggtcctggagtgctac
aactgtggctgtcgcaacgtcttcctcctcggcttcattcctgccaaggccgactcggtt
gtggtgctgctttgcaggcagccctgtgccagccagagcagcctcaaagacatcaactgg
gacagctcgcagtggcagcccctgatccaggatcgctgcttcctgtcctggctggtgaag
atcccctctgagcaggagcagctgagagcacggcagatcactgctcagcagatcaacaag
ctggaggaactctggaaggaaaatccctctgccaccttggaggatctggagaagccgggg
gtggatgaggagccgcagcacgtgctcctgcggtacgaagatgcctaccagtaccagaac
atattcggccccctggtcaagctggaggctgactacgataagaaactgaaagagtcacag
actcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctac
ttcactttgcccaagactgactctgacatgcggctgatgcagggggatgagatctgcctg
cgctacaaaggggacctggcgcccctgtggaaagggatcggccacgtcatcaaggtcccc
gacaattatggcgatgagattgccattgagctgcggagcagtgtgggtgcacctgtggag
gtgactcacaacttccaggtggatttcgtgtggaagtcgacctcctttgacaggatgcag
agcgcattgaaaacattcgctgtggatgagacctctgtgtctggctacatctaccacaaa
ttgcttggccatgaggtagaggacgtcatcatcaagtgccagctgccaaagcgcttcaca
gcccaagggctgcccgaccttaaccactctcaggtttacgccgtgaagactgtgctgcag
agaccactgagcctgatccagggcccgccaggcacggggaagactgtgacctcagccacc
atcgtctaccacctggctcgtcaaggcaacgggcctgtgctggtctgtgccccgagtaac
atagctgtggatcagctgaccgagaagatccaccagacggggctgaaagtcgtgcgcctc
tgtgccaagagtcgcgaggccattgattccccggtgtccttcctggccctgcacaaccag
atcaggaacatggacagcatgccggagttgcagaagctgcagcagctgaaggatgagact
ggggagctgtcgtctgccgacgagaagcgctaccgtgccctgaagcgcactgctgagagg
gagctgctcatgaacgcggatgtcatctgctgcacatgtgtgggtgctggtgacccaagg
ctggccaagatgcagttccgctccattttaatcgacgaaagcacccaggccactgagcca
gagtgcatggttcctgtggtcctcggtgccaagcagctgatcctcgtgggtgaccactgc
cagctgggtccggtggtgatgtgcaagaaggcggccaaagctgggctctcacagtcactc
ttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggttcagtatcgcatg
caccctgcactgagtgccttcccgtccaacatcttctatgagggctctctccagaatggc
gtcaccgcagcggatcgtgtgaagaaggggtttgacttccagtggccccagcctgataag
ccaatgttcttctacgtgacccagggccaggaggagattgccagctcaggcacctcctac
ctgaacaggacggaagctgcaaatgtggagaagatcaccacaaagctactgaaggcaggt
gccaagccagaccagatcggcatcatcacgccctatgagggtcagcgctcttacctcgtg
cagtacatgcagttcagtggctccctgcacaccaagctctaccaggaggtggagatcgcc
agcgtggacgccttccagggccgcgagaaggacttcatcatcctctcttgcgtgcgggca
aatgagcaccaaggaatcgggtttttgaacgaccccagacgtctcaatgtggccctgacc
agagcaaggtacggtgtcatcattgtgggcaacccaaaggctctgtcaaagcagccactc
tggaaccacctgctgaactactataaggagcagaaggtgctggtggaggggcccctaaac
aacctgcgtgagagcctcatgcagttcagcaagcccaggaagctcgtcaacaccatcaac
ccgggagcccgcttcatgacaacagccatgtatgatgctcgggaagccattatcccagga
tcggtctatgatcgcagcagccagggccggccctcgaacatgtacttccagacccacgac
cagatcggcatgatcagcgccgggcccagccatgtggccgctatgaacattcccatcccc
ttcaacctggtcatgccacccatgccgccacccggctattttggacaagcgaatgggcct
gctgcgggccggggcacccctaaaggcaagactggtcgtgggggacgccagaagaaccgc
tttgggcttcctgggccaagccagaccaacctccccaacagccaggccagccaggatgtg
gcgtcgcagcccttctcccagggcgccctgacacagggctacatttccatgagccagccc
tcccagatgagccagcccggtctctctcagcccgagctctcccaggacagttaccttggt
gatgagtttaaatcacagattgatgtggcgctgtcacaagactccacataccagggagag
cgggcgtaccagcatggcggggtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
