Geobacillus sp. WCH70: GWCH70_0050
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Entry
GWCH70_0050 CDS
T00915
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gwc
Geobacillus sp. WCH70
Pathway
gwc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gwc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GWCH70_0050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gwc03400
]
GWCH70_0050
Enzymes [BR:
gwc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GWCH70_0050
DNA repair and recombination proteins [BR:
gwc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GWCH70_0050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ACS22992
UniProt:
C5D376
LinkDB
All DBs
Position
58809..62342
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYFVENQDVRSIIEGVKARLKEQLVVGLSGSARSVFISSLYRETERPLLVIAHNL
FQAQKIYDDLVQLLGAEEVFLYPVNEVIAAEMAIASPELKAQRLEVMNYWLKHNKGVVIC
PVAGLRRLLPPVSLWRDHMLTLEVHHHIDVEHYKQRFVQMGYKRVATVSTPGEFSVRGGI
IDIYPLTAEFPYRIELFDTEIESIRTFTADDQRSRDEVQQVTIGPADEMIVYGEMLERGI
ERIEAGLAESLNKLKDEKAKQLLLEHVSSELEQLKQGQEIEQQYKYTALFYNEPASLLDY
MPENGILLMDEMSRLQEMAESLDKEEAEWYTSLLSEGKIIHDVPISHSFSELLQKHPKQR
IYLSIFLRHVPHTHPENIVNISCKQMQNFHGQMSLLKSELERWKKANYAVVFLAPNAERM
KKLQSVFEDYEIDVAPLSDEAMLMHGKYQMLEGDLNTGFELPMQKLAVITEEELFKKRAK
RPIRRQKLSNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGSD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRTRKQQAETIK
GLKDGTIDMVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELIREAIERELARDGQVFFLYN
RIEDIDAKAEEISQLVPEARVTYAHGRMTENELESTMLAFLEGQYDVLVTTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEDAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEKRKGIKQEEAKPE
VTIDLEVDAYIPDTYISDGLQKIDMYKRFKAVETMEDVEALRDEMLDRFGEYPDEVAYLF
QIAEIKVYAKQIGVESIKQQKQQIEILFDENASKDVEIQRLSKIGRQYGRLFGFGMEGSK
LKIVLYIKELKPQEWLMILYETLKELSGVKGEKSIIA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgttgcatcgctattttgttgagaatcaagatgtccgttccattatcgaaggc
gtgaaagctaggttgaaagaacagcttgttgtcgggttatccggctctgcccggtctgtt
ttcatttcgtcgttatatagagaaacagaaaggccgctcttagtgattgcacacaatttg
tttcaagcacaaaaaatatatgatgaccttgttcaactgcttggggcggaagaggtattt
ctttatccagtaaacgaagtaattgccgcagaaatggcgatagccagtccagaattaaag
gctcagcgcttagaagtgatgaattattggctgaaacataacaaaggtgttgtcatttgt
cctgttgccggattacgacgtctacttcctcctgtgtcattatggagagatcatatgttg
acattggaggttcatcatcatatagatgttgaacattataagcaacggttcgtacaaatg
ggatacaagcgtgttgcaactgtgtcaacccctggggagtttagtgttcgcggcggtatt
attgatatttatccgttaacggcagaatttccatatcggattgagctatttgatacagaa
atcgaatcgattcgtacgtttaccgcggatgatcagcgttcccgcgatgaagtacaacaa
gtaaccattggacctgctgatgaaatgattgtttacggggagatgctggagcggggaatc
gaacgaattgaagcaggattagcggaaagcctcaacaaattaaaagatgagaaagccaaa
caattattgctagaacatgtgtcgtcagagcttgagcagttaaaacaagggcaggaaatt
gaacaacaatataaatatacggcgctcttttataacgagcctgctagtttgctagattac
atgccggaaaatggaatattgttgatggatgaaatgagcagattacaagagatggcagaa
agtttagataaagaagaagcagaatggtatacaagtttacttagcgagggaaaaatcatc
catgatgttccaatttctcactctttttctgaattattacaaaaacatccaaaacagcgg
atttatttatccatttttctacgtcatgttccgcatacacatccagaaaacattgtcaat
atttcgtgcaagcaaatgcaaaacttccacggacaaatgtctttgcttaagtctgagcta
gagagatggaaaaaagcaaattatgctgttgtatttttagcaccgaatgcggaacggatg
aaaaaactgcaatcggtgtttgaagattacgaaatcgatgtcgccccgctaagcgatgaa
gcaatgctgatgcacggcaaatatcaaatgctcgagggagatttaaatacaggatttgag
ctgccgatgcaaaagctggctgtgattacagaagaagaattgtttaaaaagcgggcgaaa
agaccaattcgccgccaaaaattatcgaatgcggagcggattaaaagttattcggagctg
caagtgggcgattacgtggttcatgtcaaccacggtatcggcaaatatttgggaatcgaa
acattagagattaacggtgtccataaagattatatccatattcaatatcagggcagcgat
acgttatatgtgcctgtggatcaaattgatcaagtacaaaaatacgttggttcagaagga
aaagagccgaaaatttataagttaggcgggtccgaatggaaaaaagtcaaaaagaaagtc
gagtcgtccgtccaagatattgctgaagatttaattaagttatatgcggaacgcgaagca
agcaaaggatacgcgttttccccggatacagaaatgcagcgggaatttgaagcggcgttt
ccgtatcaggagacagaagatcagctgcgttcgattgaggaaattaaacgcgacatggag
agcgacaagccgatggaccgtcttctttgcggcgacgttggctacggaaagacggaagtt
gcgctgcgggcagcgtttaaagcgattatggacgggaaacaagtcgcgtttcttgtaccg
acgacgattttagcacagcagcattacgaaacagttcgggagcggtttcaaggatttccg
attaacgttggacttttaaatcgattccggacgagaaaacagcaggcggaaacgatcaaa
gggctgaaagacggaacgattgatatggtcatcggcacgcaccgcctattatcgaaagat
gtgcagtttaaagatttagggcttctcattattgacgaagagcagcggtttggcgtcacg
cataaggaaaaaatcaagcagctaaaggcaaatatcgatgtgttgacattaacggcaaca
ccaattccaaggacgttgcatatgtccatgatcggagtgcgtgacctgtccattattgaa
acgccgccagaaaatcgtttcccggtgcaaacgtatgtgatggaatatacccctgaactt
atacgagaggctattgaacgagagctggcaagagatggccaagtctttttcttatacaat
cgtattgaagatattgatgccaaagcggaagaaatttcacagctcgtaccggaagcgcgt
gttacttatgcgcacgggcgaatgacagaaaatgagttggagtccacgatgttggcgttt
ttagaaggccagtatgacgtgcttgtcacaacgacgattattgagacaggtgttgacatt
ccaaatgtgaacacattaattgtctatgatgcagatcgcatgggattatcgcaattgtat
cagctgcgcggtcgcgtcggacgttctaatcgcgttgcttatgcgtattttacgtatcgg
aaagataaagtgctcaatgaggatgctgagaaacgtttacaagcaatcaaagaatttacc
gagcttggctcagggtttaaaattgcgatgcgtgacttatcgattcgcggcgctgggaat
atattaggcgcgcaacaacatggattcattgattctgtcggctttgatttatattcacaa
atgttaaaagaagcaatcgaaaaacgaaaaggaatcaaacaggaagaagcaaaacctgaa
gtaacgattgatttagaagtcgacgcttatattccagatacgtatatttctgacgggtta
caaaaaattgatatgtacaagcgttttaaagcggtggaaacgatggaagacgtggaagca
ttgcgggatgaaatgcttgaccgctttggtgagtatccggatgaagtcgcttatttattc
caaattgcggaaattaaagtatatgcgaaacaaataggagtagaatcgattaaacaacag
aaacagcaaattgaaattttatttgatgagaacgcatcaaaagatgtggaaattcagcgt
ttatcgaaaatcggcaggcaatacggtcgcttattcggttttggaatggaaggttccaaa
ttaaaaattgttttatacattaaagaattgaagccacaagaatggttaatgattttatat
gaaacgttaaaagagctttcgggcgtaaaaggtgaaaaatcgattattgcataa
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