Geobacillus sp. WCH70: GWCH70_0104
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Entry
GWCH70_0104 CDS
T00915
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gwc
Geobacillus sp. WCH70
Pathway
gwc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gwc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GWCH70_0104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gwc03021
]
GWCH70_0104
03400 DNA repair and recombination proteins [BR:
gwc03400
]
GWCH70_0104
Enzymes [BR:
gwc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GWCH70_0104
Transcription machinery [BR:
gwc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GWCH70_0104
DNA repair and recombination proteins [BR:
gwc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GWCH70_0104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACS23044
UniProt:
C5D3R0
LinkDB
All DBs
Position
128869..132468
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLEKEVATLKEELKTAQGQRRARIIKRLEVLEAFRNSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAVH
AGSLKNETFTEEQNNKLLITTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGA
NVKEEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILEEAQAKVDTVLKQFRRGLITDEERYERVISIWSEAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVIVKLE
ERLVGRYAQKTVKHPETGEILVRKDEMITEDIANAIIKAGIEEVWIRSAFTCNTRHGVCK
KCYGRNLATGADVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGIVTSISQTRDRQYEIVVKGEVETRSYIAPYNARLKVEEGQQVER
GQELTEGSIDPKQLLKVRDVTSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNEKALLEGKRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRKVKPVIKKEANEDAVTSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataaatttgagtacatgaaaatcgggctcgcttcaccggagaaaatc
cgttcttggtcgtacggtgaagtaaaaaaaccagaaacgattaactatcgtacattgaaa
ccagaaaaagacggattattttgtgagcgtattttcggaccaacaaaagattgggaatgt
cattgtggaaaatataagcgcgtacgttataaaggtgttgtctgcgaccgttgcggtgtc
gaagtgactcgctcgaaagtccgtcgtgaacggatgggtcatattgaactagcagctcct
gtttcacatatttggtatttcaaaggaatcccaagccgtatgggactcgttttggacatg
tcgccacgtgcgttagaggaagtgatttatttcgcttcatacgttgtgactgatccaggt
gatacgccactggagaaaaaacaattgctttccgaaaaagaatatcgtgcgtatcgtgaa
aaatacgggcaatcgttccaagcctccatgggtgcagaggcaattaaaaaacttcttcaa
gatatcgacttagaaaaagaagtggcaacgttaaaagaggagttaaaaacagcacagggg
cagcgacgcgcccgcattattaagcgtttggaagtgttagaggcgttccggaattcagga
aacgatcctgcttggatggtgcttgatgtgcttcctgttattcctcctgaattgcggccg
atggtgcaattagacggtggacgctttgcgacatcagacctcaatgatttatatcgccgt
gtcattaaccgaaacaaccgcttaaaacgtttattagatcttggtgcaccgaacattatt
gtgcaaaacgaaaaacggatgcttcaagaagcggtcgatgcgttaatcgataacggtcga
cggggccgtccggtaacaggacctggaaaccgtccgctaaaatcgctctctcatatgtta
aaagggaaacaaggtcgtttccgtcaaaacttgcttggtaagcgcgtagactattcaggc
cgttcggttattgtcgtcggtccgaacttgaaaatgtatcaatgcggcttgccgaaagaa
atggcgcttgagctctttaaaccgtttgtgatgaaagagcttgtcgaacgtggattagcg
cacaacattaaaagtgcaaaacggaaaattgagcgcgtccatccggaagtatgggatgtg
ttagaagatgtgattaaagagcatccggtattacttaaccgtgccccaactcttcaccga
ttgggtattcaagcgttcgaaccaacgcttgttgaaggtcgcgcgattcgcttgcatccg
cttgtatgtacagcatataacgctgactttgacggagaccaaatggccgtgcacgttccg
ttatccgcagaagctcaggcagaagcgcgattgctcatgctggccgcgcaaaatattttg
aacccgaaagacggaaaaccggttgttactccttcgcaagacatggttttaggtaactat
tatttaacgatggaacgtgaaggagcaatcggtgaaggaatggtatttaaagatacggat
gaggcgttgcttgcgtatcataatggttatgtccatttacattcacgaatcgctgttcat
gccggttcattgaaaaatgaaacgtttacggaagagcaaaataacaaactgcttattaca
acagttggaaaacttattttcaacgaaattttaccaaactcattcccttatattaacgag
ccgacaactgaaaatatcgaagggcggacaccggataaatacttcctcgataaaggtgca
aatgtaaaagaagaaattcgcaagcgcgaacttgttccaccgtttaagaaaaaagtgctc
ggacaaattatcgctgaggtatttaagcggttcaaaattacagaaacatcgaagatgctt
gaccgcatgaaagatttagggttccaatattcaacaaaagccggcattacgattggggtt
gccgatattgtcgtattaccggaaaaacaagaaattcttgaagaagcacaagcaaaagtc
gacacggtcttaaaacaattccgacgcggtttaattactgacgaagagcgctatgaacgt
gtcatttcgatttggagcgaagcgaaagacaaaattcaagacaggctgatgaaatcgctc
gataaacgcaacccaatctttatgatgagcgattctggagctcgcggtaacgcatcaaac
tttacgcagcttgccggaatgcgcggtctcatggcaaacccagcgggacgcatcatcgaa
ttgccgatcaaatcttcgttccgtgaaggattaacggtattggaatactttatttctaca
catggagcgcgcaaagggcttgctgataccgcactaaaaacagcagactccggttatctc
acaagacgtcttgtcgatgtggcgcaagatgtcattgttcgtgaagaggattgcggtacg
gaccgtggtattcttgcaagagcattaacggacggtacggaagtcattgtcaaactagaa
gagcgtcttgttggccgttatgcgcaaaaaacggtgaaacatccggaaacaggcgaaata
ctcgttcgcaaagacgaaatgatcaccgaagatattgcgaacgcgattattaaagcaggc
attgaagaagtatggatccgctctgcctttacatgcaatacacgacacggtgtatgtaaa
aaatgttacggtcgtaacttggcgacaggtgcggatgtggaagttggcgaagcggtcggt
attatcgctgcgcaatcgatcggtgaacctggtacgcagttaacgatgcgtacgttccac
acaggcggtgttgccggcgacgatatcacccaaggtttgccgcgtgttcaagagctgttt
gaagcacgtaatccgaaagggcaagcggttatttctgaaattgacggaatcgtcacttcg
attagccaaacgcgtgatcgtcaatatgaaattgtcgtaaaaggcgaggtcgagacacgc
tcttacattgctccttataacgcaagattaaaagtagaggaaggacaacaagtagagcgt
ggtcaagaacttactgaaggatccattgatccaaaacaattattaaaagtaagggatgtt
acgtccgttcaagaatatttattgcgtgaagtacaaaaggtatatagaatgcaaggggta
gaaattagcgataaacatatcgaagtaatggtccgtcaaatgcttcgtaaagtgcgcgtc
attgatgcgggggatacagatgtcctgcctggaacgttattagatgtgcatcaatttacg
gacgtgaacgaaaaagcgcttcttgaaggaaaacgtccagcaacggctcgcccagtattg
cttggtattacaaaagcatcgctagaaactgattcgttcttatcagcggcatcgttccaa
gaaacgacacgcgttttaaccgatgcggcgatcaaaggaaaacgggatgagttgctcggc
ttaaaagaaaatgttattatcggtaagcttgtcccagcaggaactggaatggcgcgctat
cgtaaagtaaaaccggtaattaagaaagaagcaaatgaggacgcggttacttctaaataa
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