Geobacillus sp. WCH70: GWCH70_2955
Help
Entry
GWCH70_2955 CDS
T00915
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gwc
Geobacillus sp. WCH70
Pathway
gwc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gwc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWCH70_2955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gwc03019
]
GWCH70_2955
03016 Transfer RNA biogenesis [BR:
gwc03016
]
GWCH70_2955
Enzymes [BR:
gwc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GWCH70_2955
Messenger RNA biogenesis [BR:
gwc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GWCH70_2955
Transfer RNA biogenesis [BR:
gwc03016
]
Prokaryotic type
tRNA degradation factors
GWCH70_2955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
OB_HELZ2
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ACS25628
UniProt:
C5D7L8
LinkDB
All DBs
Position
complement(2976467..2978755)
Genome browser
AA seq
762 aa
AA seq
DB search
MDQSLVDRILTFMRDEAYKPLTVQELEEAFGITDAAEFKEFVKALVAMEEQGLVVRTRSN
RYGVPEKMNLVRGKVSGHAKGFAFVVPEDPSLDDIFIPPSEMKNAMHGDTVLVRVHSESS
GARREGTIVRILERGVTEVVGTYTESKYFGFVIPDDKKIVNDIFIPKHAANGAVEGHKVV
VRLTSYPQGRMSAEGEVIKILGHKNDPGVDILAIIHKHGLPLQFPDEVIEHANSISDTIS
EKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINERGEVVSHEIFQS
VIRTTERMTYSDVNKILVDKDEELRKKYEPLVPMFELMAELAEILRNKRMKRGAIDFDFK
EAKVLVDENGKPYDVVLRERSVAERLIEEFMLVANETVAEHFHWLNVPFIYRVHEDPKPE
KLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMVISTVMLRSMKQARYDAE
SLGHYGLSTDFYTHFTSPIRRYPDLIVHRLIRTYLINGQMDEQTQRKWAEKLPDIAEHAS
DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT
DDYYRYDERHYAMIGERTGKVYRIGDEITVRVINVNKDERIVDFEIVGMKGRRPKEAKSA
PVVIEGKKRKKTNKQNGKAKKSKKFYEDVPQLKAKKKKKKKR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatcattagtcgatcgaattttaacgtttatgcgggacgaggcgtacaagcct
cttaccgttcaagagttggaagaagcgttcggcattacggatgcggccgagtttaaggaa
tttgtgaaggcgcttgtcgctatggaagaacaagggcttgttgtgcgtacgagaagcaat
cgctacggtgtgccggaaaaaatgaacttagtgcgcggaaaagtgtccggacacgcaaaa
gggtttgctttcgttgtgccggaagatccgtcgctcgacgatattttcatcccgccttcc
gagatgaaaaacgcgatgcatggcgataccgtattagtgcgtgtgcattccgaatcgtca
ggcgcccgcagggaaggaacgattgtacggattttagaacgcggtgtcaccgaagttgtc
ggaacttatacggaaagcaagtatttcggatttgtcattccggatgataaaaaaattgtc
aatgacatttttattccgaaacatgccgctaacggtgctgtggaaggacataaagtggtc
gtgcggttgacatcgtacccgcaaggacgaatgagcgccgaaggagaagttattaaaatt
ctcggacataaaaacgacccaggtgttgatattttagcgattattcataaacacggcctt
cctttgcaatttccagatgaagtcatcgaacacgccaacagcatttccgatacgatttcg
gaaaaagatttgcaaggccgccgcgatttgcgcgatcaaatgattgtcacgatcgacgga
gaagacgcgaaagacttagacgacgctgtaacggtcactaagcttgagaacgggaattac
aagcttggcgtccacattgccgatgtcagctattatgtggaagaaggctcgccaattgac
cgcgaagcgtacgaacgagggacaagcgtttatttggtggatcgcgtcattccgatgatt
ccgcatcgtttatcgaacggcatttgctccttaaatccgaaagtcgatcgcttaacactt
tcatgtgaaatggaaattaacgaacgcggcgaagtcgtcagccatgaaatttttcaaagc
gtcattcgtacgacagagcggatgacgtattcggatgtgaacaaaattctcgttgataaa
gacgaggaactaagaaaaaaatacgaaccgcttgtgccgatgtttgaattgatggcagag
cttgcggaaattttgcgcaataaacggatgaagcgcggtgcaattgatttcgactttaaa
gaagcaaaagtgcttgtggatgagaatggaaaaccttatgatgtcgtgcttcgtgaacga
tcggtggcggagcggcttattgaagaatttatgctggtggcgaacgaaacggtcgctgaa
cattttcattggttaaacgttccgtttatttatcgtgttcacgaagatccaaaaccagaa
aagctgcagcgttttctcgaatttattacaaactttggctacgtcgtcaaagggacagga
aaccaaattcatccgcgcgcgctccaggaaattttagaagcggttcgcggcgagccggaa
gaaatggtcatatcgacggtgatgcttcgctcgatgaagcaggcgcgctatgacgcggaa
agtctcggtcactacggattatcgaccgatttttatacgcattttacatctccgatccgc
cgttatccagacttaattgtgcaccgtctcattcgtacgtacttaattaatgggcaaatg
gatgaacaaacccaacgaaaatgggccgaaaagcttccagacatcgctgaacacgcatcc
gatatggagcgccgcgctgtggaagccgagcgggaaacggatgatttgaagaaaacagag
tttatggaagataaaatcggcatggagtttgacggaattattagctcggttacgaacttc
ggcctttttgtcgaactgccgaacacgatcgaagggcttgttcatgtcagctacttaacg
gacgactattatcgctatgatgaacggcattacgccatgatcggtgagcgaaccggaaaa
gtgtaccgcatcggcgatgagattaccgtgcgtgtcattaacgtgaacaaagatgagcgg
atcgtcgactttgaaattgtcggcatgaaaggccgccgtcctaaagaggcaaaaagtgca
cctgtcgttattgaagggaaaaagcggaaaaaaacaaataaacaaaatggaaaagcgaaa
aaatcaaagaaattttacgaagacgttccacagctaaaagcaaaaaagaagaaaaagaaa
aaacgataa
DBGET
integrated database retrieval system
