Komagataeibacter medellinensis: GLX_08560
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Entry
GLX_08560 CDS
T01631
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gxy
Komagataeibacter medellinensis
Pathway
gxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLX_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gxy03019
]
GLX_08560
Enzymes [BR:
gxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GLX_08560
Messenger RNA biogenesis [BR:
gxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GLX_08560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CHASE8
YbbR
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAK83268
UniProt:
G2I571
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All DBs
Position
complement(996066..997403)
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AA seq
445 aa
AA seq
DB search
MTTFADLHLAEPLLRALDEEGYTQPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPI
LDRLFREKGRAHPKGARALVLAPTRELASQIGESFASYARHMRFSHAVVFGGVGQGRQIE
ALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEADRMLDMGFVRDIRKIVAALPTD
RQTLLFSATMPKSISDLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDTANKREALKLLV
DSPKVERAVVFTLMKHEANKVAAFLSEHGITAEAIHGNKSQGARERAMSGFRSGNVKVLV
ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGREGWAVSLCDAEQRAWLRDI
EKNIGKAIPVVSEHPYHSEAAENSTMRPPVLGGGGRGRGGGGGRPGGGRPGGGGRPAGGG
RPPGGGRGGRPGGGSRSGGAGRRAV
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtttgccgatcttcatcttgcagagccgctgctgcgtgcactggacgaggaa
ggctacacccagcccacccccattcaggctggcgccattccctacctgctggaagggcgt
gacctgctgggtctggcacagaccggcacgggcaagaccgcggccttcgcgctgcccatc
cttgaccgtcttttccgtgaaaagggtcgtgcccaccccaagggcgcgcgcgccctggtg
ctcgcccccacccgtgaactggcttcccagatcggggaaagctttgcatcctatgcccgt
cacatgcgcttcagccatgccgtggtgttcggtggtgtggggcaggggcgccagatcgag
gccctgcgccgtggcgtggacgttctggtcgcagcccccggccgcctgctggacctgatg
ggtcaggggcatgtcgacctgtccgggcttgaggtgctggtgcttgatgaagccgaccgc
atgctcgacatgggcttcgtgcgcgatatccgcaaaattgtggcagccctgccgaccgac
cggcagacgctgctgttctcggccaccatgcccaagagcatttccgacctggcgcatggc
ctgctgcgtgacccggctaccgtgcaggtcacaccgccatccagcacggtggaccgtatc
cgccaggcagtgatgtttgtcgataccgccaacaagcgcgaagccctgaagctgctggtt
gactcccccaaggtcgagcgcgccgtggtgttcacgctgatgaagcatgaagccaacaag
gttgctgccttcctgagtgagcacggcattacggctgaagcgattcacggcaacaagtca
cagggtgcgcgcgagcgggccatgtccggctttcgctcgggtaatgtaaaggtgctggtg
gcgactgatatcgcggcccgtggcattgacgtggatgatgtgacccacgtgtttaactac
gatctgcccaacgtgcccgagagctacgtgcaccgcattggccgtaccgcgcgtgcgggg
cgcgagggttgggccgtatcgctgtgcgatgcggaacagcgcgcctggctgcgtgatatc
gagaagaatattggcaaggccatccctgtggtgtccgagcacccgtatcattccgaagcg
gcagaaaactccaccatgcgcccgcctgtgctgggtggcggtggtcggggccgtggcggc
ggcggtggtcggcccggtggcggcaggcccggtggtggcggtcgcccggcgggtggcggt
cgtccgcccggcggtggccggggtggccgccccggtggtggcagccgctcgggcggtgcg
ggccgtcgcgcggtctga
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