Geobacillus sp. Y412MC52: GYMC52_0048
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Entry
GYMC52_0048 CDS
T01399
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gya
Geobacillus sp. Y412MC52
Pathway
gya03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYMC52_0048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gya03400
]
GYMC52_0048
Enzymes [BR:
gya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYMC52_0048
DNA repair and recombination proteins [BR:
gya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GYMC52_0048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
DUF3473
Motif
Other DBs
NCBI-ProteinID:
ADU92563
UniProt:
A0A0E0T786
LinkDB
All DBs
Position
58932..62465
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNL
FQAQKMYDDLVSLLGPEDVFLYSVNEVIAAEMAVASPELKAQRLEIMNHWAQGGKGVVVC
PVAGLRRLLPPPSLWKQYLFTFFVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGI
IDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGI
ERIEAGLASSLETMKDEAAKQRMYEHIHAELEQLREGQEIEQQYKYMSLFYEKVASLLDY
LPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGGKMIHGVPLSHSFSELLQKHRFQR
VYLSLFLRHVPYAHPQNVVNITCKQMQNFHGQMALLQSEVERWEKANYAVVFLAPNAERV
KKLQSLLQDYEIDALPLARDAALLHGKCQLLEGDLNTGFELPLQKIAVITEEELFKKRVK
RPVRRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRTKKQQAEIIK
GLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYN
HIEDIDLKAEEIAQLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQPD
VVIDVEVDAYIPSTYIADELQKIEMYKRFKAVETLEDVEALREEMVDRFGDYPDEVAYLF
QIAELKVLAKQLGVESMKQHKQQIDILFTEQASKTVEIQRLSDIGRRHGRLFGFGMDGAK
LKIVLYIKDMKPHEWLMILEETLRRLSGVEKEKSVTA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgttgcatcgctatttagctgaaaaccaagatgtccgtacgatcattgaaggg
ctccatgtccgtttgaaggaacagcttgtcgccgggctgtccggatcggcccggtctgtt
tttatttccacgctttacaaggagacaggccggccgctgttagtcgtgtctcacaatttg
tttcaggcgcaaaaaatgtatgacgatctcgtttcgttgctcgggccggaagacgtgttc
ctttattcagtgaacgaagtgatcgccgctgagatggcggtcgccagcccggagctgaag
gcacagcgcctagagattatgaaccattgggcgcaaggcggaaaaggagttgtcgtctgc
ccggtcgccggcttgcggcgtttgttgccgccgccgtcgctttggaagcagtatttgttc
accttcttcgttggacaagagttcgatgtagaacgttgtaaacagaagtttgtgcaaatg
gggtacaaacgggtcggcaccgtttccgcccctggagagttcagcgtccgcggcggcatc
atcgacatttatccattgaccgctgagcttccgtaccgcatcgagctgtttgatacggaa
atcgaatcgattcggacgttcactcctgacgaccaacgttcgcaagggcaaatcgagcgc
atcatgatcgggccggccgatgaaatcattctcgatggcgagacgcggcgccgaggaatc
gagcggattgaagcggggcttgcgtcgagtttggaaacgatgaaagatgaggccgccaaa
cagcggatgtatgaacatattcacgctgagcttgagcaattgcgcgaggggcaggaaatc
gagcaacaatataaatatatgtcccttttttatgaaaaggttgcgagtttgctagattac
ctgccagaagacggcgtgctgctcatggatgaaatgagccggctgcaagaggcggcggaa
cggttggaccgcgaagaggcggaatggtatacgagtttgcttgacggcgggaaaatgatt
catggcgtgccgctttcgcattcgttttctgaattattgcaaaaacatcgattccagcgg
gtatacttatcgttgtttttgcgccatgttccgtatgcccacccacaaaacgtcgtcaat
attacgtgcaaacagatgcaaaacttccatgggcaaatggcgcttcttcaatccgaagtc
gagcggtgggaaaaggcaaactatgcggtcgtctttttggcgccgaatgcagagcgggtg
aaaaagctgcaatcattgcttcaagattatgagattgacgcgctgccgctcgcgcgcgat
gcggctttgctgcatggcaaatgccagctccttgaaggagatttaaataccgggtttgaa
ttgccgttgcaaaaaattgccgtcatcacagaagaagagctgttcaaaaaacgggtcaaa
cgcccggtgcgccggcaaaagctgtccaacgccgagcggatcaaaagctacgccgaattg
caagtcggcgactacgtcgtccatgtcaaccatggcatcgggaaatatttaggcatcgag
acgttagaaatcaacggggtgcataaagactatattcatatccagtaccaaggcggcgat
acgctgtatgttccggtcgaccaaatcgatcaagtgcaaaaatacgtcggctcggaaggg
aaagaaccaaaaatttataaactcggcggttcggaatggaaaaaggtcaaaaagaaagtg
gaatcatccgtccaggatattgctgaagatttaatcaagctgtacgccgagcgtgaggca
agcaaaggatatgcgttttcgccggacaccgagatgcagcgcgaatttgaagcggcgttt
ccgtatcaagagacggaagatcagcttcggtcgattgaggaaattaagcgtgatatggag
agcgacaaaccgatggaccgcctcctttgcggcgacgtcggctacgggaagacggaagtg
gcgttgcgggcggcgtttaaagccattatggacggcaaacaagtggcctttcttgtgccg
acgacgatcctagcccaacagcattacgaaacggtgcgcgaacggtttcaagggttccca
atcaacgtcggactgttgaaccgcttccggacgaaaaagcaacaagccgagatcatcaaa
gggctaaaagatgggacgatcgatatggtcatcggaacgcatcggctgctgtcgaaagac
gtgaagtttaaagatttaggcttgctcattatcgacgaggagcaacggtttggcgtggcg
cataaagaaaaaatcaagcagctgaaggcgaacatcgacgtgctcaccttaacggcgacg
ccgattccgcgtacgttgcatatgtcgatgattggcgtgcgcgatttgtcgatcatcgag
acgccgcctgaaaaccgattcccggtgcaaacgtatgtcatggaatatacgcccgaactc
gtcaaagaggcgattgaacgtgagctcgcccgcgacgggcaggtgtttttcctttacaac
catattgaagacatcgatttgaaagcggaagaaatcgcacagcttgtcccggaagcgcgc
gtcacttacgtgcatggccgcatgtcggaaacggagctcgaatcgacgattttggcgttt
ttggaagggcaatacgatgtgctggtgacgacgacgatcattgaaacgggcatcgatatt
ccgaatgtcaacacgctcatcgtctatgacgccgaccggatgggattgtcgcagctgtac
cagctgcgcgggcgcgtcggccgctccaaccgcgtcgcttatgcgtatttcacctatcgg
aaagataaagtgctcaatgaagcggcagaaaagcggctgcaagccattaaagagtttacc
gagctcggctctggttttaaaattgccatgcgcgatttgtcgatccgcggcgcgggcaac
attctcggcgccgaacagcacggctttatcgactcggtcggattcgatttgtattcgcaa
atgttgaaagaagcgatcgagaaacggcgcggcatcaagcgagaagacgagcagccggat
gtcgtcatcgatgtcgaagtcgacgcctatattccgagcacatacattgcagacgagttg
caaaagatcgagatgtacaagcgatttaaggcagtggagacgctcgaagacgttgaggcg
ctgcgtgaggaaatggtcgaccgcttcggcgattatccagatgaagttgcgtatttgttc
caaattgctgagttgaaggtgttggccaagcagcttggcgtcgaatcgatgaagcaacat
aagcagcaaattgacatcttgtttactgaacaggcatcgaaaacggtggaaatccagcgt
ctatctgacatcggacgccggcatggccgcttattcgggtttggcatggacggagcgaag
ctgaaaattgtgctctatatcaaggacatgaagccgcacgagtggctgatgattttagag
gagacgctgcggcggctgtccggggtggaaaaagagaagtcggtgacggcataa
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