Geobacillus sp. Y412MC52: GYMC52_2226
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Entry
GYMC52_2226 CDS
T01399
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gya
Geobacillus sp. Y412MC52
Pathway
gya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC52_2226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gya03019
]
GYMC52_2226
03400 DNA repair and recombination proteins [BR:
gya03400
]
GYMC52_2226
Enzymes [BR:
gya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYMC52_2226
Messenger RNA biogenesis [BR:
gya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYMC52_2226
DNA repair and recombination proteins [BR:
gya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GYMC52_2226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ADU94628
UniProt:
A0A0E0TD33
LinkDB
All DBs
Position
complement(2292345..2293856)
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AA seq
503 aa
AA seq
DB search
MDELTKTLRMKFGHASFRPGQREVAEDVLAGRDVLAMLPTGSGKSLCYQLPAYLLQGSVL
IVSPLVSLMEDQVEQLRRRGEKRVIAFHSLLDAEEKWQALASLAEFRFIYASPEMLQSAK
FLTALRRVCISLFVVDEAHCISQWGYDFRPDFLKLGEIRRALGAPPCLALTATAPPEVQE
DIIRTLGMDGARRHIHSVDRPNIALCVEHCSSTEDKAARLADYAKRLEGPGIIYFSSRQW
AEEMARRLEQCGAGRVAYYHAGMDGEQRLLVQQQFVYGQLDIVCCTSAFGMGVNKENVRF
VLHFHMPAQLEAYVQEIGRAGRDGAPSLAVLFYADGDRTMAQAVAEAELLSPRELREWCR
RLPEGAGWEAAMATLEAAGFTDVQKRLLAYFLEREQRAMPGWLTAEAKERLYGRMAAAIE
ARRRWKRKKLQEMDEWVHLSSCRRQALVRAFGEELTDQRNVCCDRCGLRLDVYMRAARHP
AAAPIGHWREELWRMFFSGGAAR
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttggacgagttgacgaaaacgctgcgcatgaagttcggacatgcttcattccgcccgggt
cagcgggaagtggcggaagatgtgcttgcagggcgcgacgtgctggcgatgctgccgacc
ggaagcggcaagtcgctttgctatcagctgccagcgtatttgcttcaaggcagtgtgctg
atcgtttcgccgcttgtgtcgctcatggaggaccaagtcgagcagttgcgccggcgcggg
gaaaagcgagtgattgcttttcacagcctgcttgatgccgaagaaaaatggcaggcgctc
gcttcgcttgcggagtttcgctttatttacgcgtcgccggagatgctgcagtcggcaaaa
tttttaacggcgcttcggcgcgtatgcatttcgctttttgtcgtcgatgaagcgcactgc
atttctcaatggggatatgactttcgcccggactttttaaagcttggggagatccggcgc
gcgctcggggccccgccgtgtttggcgttgacggcgacggcgccgcccgaggtgcaggag
gatattattcgcacgctcgggatggatggcgcccgccgccatattcattccgtcgatcgt
ccgaacatcgccttgtgcgtggagcattgttcatcaacggaggacaaagcggcgcgcttg
gccgattatgccaagcgtctcgaaggcccgggaatcatttatttttcgagccgtcaatgg
gcggaagagatggcgcgccggctcgaacagtgcggcgcggggcgggtcgcctattaccat
gccggcatggacggggagcaacggttgctcgtgcagcagcaatttgtctacggtcagctt
gacatcgtatgttgtacaagcgcattcggcatgggcgtgaacaaagaaaacgtccgattt
gtgcttcattttcatatgccggcccagcttgaggcgtatgtgcaggaaatcgggcgcgcg
gggcgtgacggagccccaagccttgctgtgttattttatgcggacggcgatcggaccatg
gcccaggcggtggcggaggccgagctgttaagtccgcgcgagctgcgtgagtggtgtcgg
cggctgccggaaggagccggatgggaagcggcgatggcgacgctcgaggctgccggattc
accgacgtacaaaagcggctgttggcgtattttttagaacgggaacaacgggcgatgcct
ggttggctgacagcggaggcgaaagagcggctgtacggcaggatggcagccgccatcgag
gcgcggcggcgctggaagcggaaaaaactgcaggaaatggatgaatgggtgcacttgtct
tcgtgccggcgtcaagcgcttgtccgcgcgtttggcgaggagctgacggatcagcggaat
gtctgctgcgatcgctgcgggctgcggcttgatgtctatatgcgcgctgcccgccatccg
gctgcggcgccgatcggccactggcgcgaagagctatggcggatgtttttcagcggaggg
gcggcaagatga
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