Geobacillus sp. Y412MC52: GYMC52_3471
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Entry
GYMC52_3471 CDS
T01399
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gya
Geobacillus sp. Y412MC52
Pathway
gya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC52_3471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gya03021
]
GYMC52_3471
03019 Messenger RNA biogenesis [BR:
gya03019
]
GYMC52_3471
Transcription machinery [BR:
gya03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GYMC52_3471
Messenger RNA biogenesis [BR:
gya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GYMC52_3471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ADU95815
LinkDB
All DBs
Position
complement(3501824..3503098)
Genome browser
AA seq
424 aa
AA seq
DB search
MELTLAALENMKLKELYELARQYKISYYSKLTKKELIFAILKARAEQDGLFFMEGILEII
PSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLHVEAV
NGEDPEVAKERVHFPALTPLYPNRQMKLETTPDKLSTRIIDLIAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPDVELIVLLIDERPEEVTDIERSVQGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKEHLEKLWAIRKTMADSPDFIERFLNKLRRTKSNEEFFALLDQEWKQGG
PLRL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacgttagcagcattagaaaacatgaaattgaaggagctgtatgagctcgcc
aggcaatacaaaatttcatactacagcaagttgacgaaaaaggagcttatttttgcgatt
ttgaaagcgcgtgccgaacaagacggcctctttttcatggaaggcatcctcgaaatcatt
ccgtcggaaggattcggctttttgcgcccgatcaactattccccgagctcggaagacatt
tacatttccgcttcccaaatccgccgttttgatttgcgcaacggggataaagtatccggc
aaagtgcggccgccgaaagaaaatgaacgctatttcggcttgcttcatgtcgaagcggtc
aacggcgaagacccggaagtcgccaaggagcgcgttcactttccagcgttgacgccgctt
tacccgaatcggcaaatgaagctggagacaacgccggacaagctgtcgacccgcatcatc
gacttgatcgctcccgtcggctttggccagcgcgggttgatcgtcgcgccgccgaaagct
ggcaagacgatgttgctgaaggaaattgccaacagcatcaccacaaaccacccggatgtc
gagttgatcgtcttgctcattgacgaacggccggaagaagtgaccgacatcgagcggtcg
gtgcaaggcgatgtcgtcagctcgacgtttgatgaggtgccggaaaaccatattaaagtg
gccgagcttgtcttagaacgggcgatgcgattagttgagcataagcgtgacgtcgtcatt
ttaatggacagcatcacccgcctcgcccgggcgtacaacttagtcattccgccgagcgga
cgcacgctctcgggcgggatcgacccagcggcgtttcatcgcccgaagcggtttttcggc
gcggcgcgcaacatcgaagaaggcggcagcttgacgattttggcgaccgccctcattgac
accgggtcgcgcatggatgacgtcatttacgaggaatttaaaggcaccggcaacatggag
ctccatcttgaccgctcgctcgccgagcgccgcatttttccggcgattgacattcgccgc
tcgggaacgcgcaaagaggagctgctcatcccgaaagaacatttggaaaagctgtgggcg
atccgcaaaacgatggccgattcgcccgactttatcgagcggtttttgaacaaattgcgc
cggacgaagtcaaacgaagagtttttcgccttgctcgatcaggagtggaaacagggcggc
ccgctccgtctgtag
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