Geobacillus sp. Y412MC61: GYMC61_0157
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Entry
GYMC61_0157 CDS
T01101
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
gyc
Geobacillus sp. Y412MC61
Pathway
gyc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gyc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GYMC61_0157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gyc03021
]
GYMC61_0157
Transcription machinery [BR:
gyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GYMC61_0157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
DUF2408
DUF2316
Motif
Other DBs
NCBI-ProteinID:
ACX76857
LinkDB
All DBs
Position
171059..172186
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AA seq
375 aa
AA seq
DB search
MAEKPAQSKQAEAAGESLEQVKEQLAELGKKRGILTYEEIAERLSGFDLDSDQMDEYYEY
LAEQGIEVISESDLEADPDIDDLAKEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVPLLS
AEEEIELAKRIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVE
KFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRE
PTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAY
ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK
LRHPSRSKRLKDFLE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaccagcccaatcaaagcaggctgaagctgccggcgaatcgcttgaacaa
gtgaaagagcaactcgctgagctcggcaaaaagcgggggatcctcacctacgaggaaatc
gctgagcggttgtctggctttgatttggactccgaccagatggatgagtattatgaatac
ctcgctgagcagggcattgaagtgatcagcgaatccgaccttgaggccgatccggacatc
gacgacttggccaaagaggaagaattcgacttaaatgacttgtccgttcctcccggcgtc
aaaatcaatgacccggtgcgcatgtacttgaaggagatcggccgcgtgccgctgttgtcg
gcggaagaagaaatcgagctggcgaaacggatcgagcaaggcgatgaagaagcgaaacgc
cggctgacggaagcgaacctccgcctcgtcgtcagcatcgccaaacggtatgtcggccgc
ggcatgctctttcttgatttgattcaagaagggaacatggggctgatcaaggcggtcgaa
aagtttgactatcggaaaggctacaagttcagcacgtacgcgacgtggtggatccgccaa
gccatcacaagggcgatcgccgatcaggcgcggacgatccgcatcccggttcatatggtc
gaaacgatcaataaactgatccgcgtccaacggcaattgctccaagacctcgggcgcgaa
ccaacgccggaagaaatcgccgaggaaatggatttgacaccggaaaaagtgcgggaaatt
ttgaaaatcgcccaagaaccggtgtcgctcgagacgccgatcggcgaggaagatgactcg
catcttggcgatttcatcgaagaccaagacgcgacatcgccatccgagcacgctgcttac
gagctgttgaaagagcagctcgaagatgtgcttgatacgctgacggatcgcgaggaaaat
gtgctgcgtctccgcttcgggcttgacgacggacggacgcggacgctcgaagaagtcggc
aaagtgttcggcgtgacgcgcgaacgcatccgtcaaattgaagccaaagcgttgcgcaag
ctgcgccatccaagccgcagcaaacggctgaaagactttttagagtga
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