Geobacillus sp. Y412MC61: GYMC61_0436
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Entry
GYMC61_0436 CDS
T01101
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gyc
Geobacillus sp. Y412MC61
Pathway
gyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC61_0436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gyc03019
]
GYMC61_0436
03400 DNA repair and recombination proteins [BR:
gyc03400
]
GYMC61_0436
Enzymes [BR:
gyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYMC61_0436
Messenger RNA biogenesis [BR:
gyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYMC61_0436
DNA repair and recombination proteins [BR:
gyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GYMC61_0436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ACX77118
LinkDB
All DBs
Position
445631..447142
Genome browser
AA seq
503 aa
AA seq
DB search
MDELTKTLRMKFGHASFRPGQREVAEDVLAGRDVLAMLPTGSGKSLCYQLPAYLLQGSVL
IVSPLVSLMEDQVEQLRRRGEKRVIAFHSLLDAEEKWQALASLAEFRFIYASPEMLQSAK
FLTALRRVCISLFVVDEAHCISQWGYDFRPDFLKLGEIRRALGAPPCLALTATAPPEVQE
DIIRTLGMDGARRHIHSVDRPNIALCVEHCSSTEDKAARLADYAKRLEGPGIIYFSSRQW
AEEMARRLEQCGAGRVAYYHAGMDGEQRLLVQQQFVYGQLDIVCCTSAFGMGVNKENVRF
VLHFHMPAQLEAYVQEIGRAGRDGAPSLAVLFYADGDRTMAQAVAEAELLSPRELREWCR
RLPEGAGWEAAMATLEAAGFTDVQKRLLAYFLEREQRAMPGWLTAEAKERLYGRMAAAIE
ARRRWKRKKLQEMDEWVHLSSCRRQALVRAFGEELTDQRNVCCDRCGLRLDVYMRAARHP
AAAPIGHWREELWRMFFSGGAAR
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttggacgagttgacgaaaacgctgcgcatgaagttcggacatgcttcattccgcccgggt
cagcgggaagtggcggaagatgtgcttgcagggcgcgacgtgctggcgatgctgccgacc
ggaagcggcaagtcgctttgctatcagctgccagcgtatttgcttcaaggcagtgtgctg
atcgtttcgccgcttgtgtcgctcatggaggaccaagtcgagcagttgcgccggcgcggg
gaaaagcgagtgattgcttttcacagcctgcttgatgccgaagaaaaatggcaggcgctc
gcttcgcttgcggagtttcgctttatttacgcgtcgccggagatgctgcagtcggcaaaa
tttttaacggcgcttcggcgcgtatgcatttcgctttttgtcgtcgatgaagcgcactgc
atttctcaatggggatatgactttcgcccggactttttaaagcttggggagatccggcgc
gcgctcggggccccgccgtgtttggcgttgacggcgacggcgccgcccgaggtgcaggag
gatattattcgcacgctcgggatggatggcgcccgccgccatattcattccgtcgatcgt
ccgaacatcgccttgtgcgtggagcattgttcatcaacggaggacaaagcggcgcgcttg
gccgattatgccaagcgtctcgaaggcccgggaatcatttatttttcgagccgtcaatgg
gcggaagagatggcgcgccggctcgaacagtgcggcgcggggcgggtcgcctattaccat
gccggcatggacggggagcaacggttgctcgtgcagcagcaatttgtctacggtcagctt
gacatcgtatgttgtacaagcgcattcggcatgggcgtgaacaaagaaaacgtccgattt
gtgcttcattttcatatgccggcccagcttgaggcgtatgtgcaggaaatcgggcgcgcg
gggcgtgacggagccccaagccttgctgtgttattttatgcggacggcgatcggaccatg
gcccaggcggtggcggaggccgagctgttaagtccgcgcgagctgcgtgagtggtgtcgg
cggctgccggaaggagccggatgggaagcggcgatggcgacgctcgaggctgccggattc
accgacgtacaaaagcggctgttggcgtattttttagaacgggaacaacgggcgatgcct
ggttggctgacagcggaggcgaaagagcggctgtacggcaggatggcagccgccatcgag
gcgcggcggcgctggaagcggaaaaaactgcaggaaatggatgaatgggtgcacttgtct
tcgtgccggcgtcaagcgcttgtccgcgcgtttggcgaggagctgacggatcagcggaat
gtctgctgcgatcgctgcgggctgcggcttgatgtctatatgcgcgctgcccgccatccg
gctgcggcgccgatcggccactggcgcgaagagctatggcggatgtttttcagcggaggg
gcggcaagatga
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