Geobacillus sp. Y412MC61: GYMC61_3125
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Entry
GYMC61_3125 CDS
T01101
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gyc
Geobacillus sp. Y412MC61
Pathway
gyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC61_3125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gyc03019
]
GYMC61_3125
03016 Transfer RNA biogenesis [BR:
gyc03016
]
GYMC61_3125
Enzymes [BR:
gyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GYMC61_3125
Messenger RNA biogenesis [BR:
gyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GYMC61_3125
Transfer RNA biogenesis [BR:
gyc03016
]
Prokaryotic type
tRNA degradation factors
GYMC61_3125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
DNA_ligase_A_M
WHD_GPIID
Motif
Other DBs
NCBI-ProteinID:
ACX79683
LinkDB
All DBs
Position
complement(3174229..3176505)
Genome browser
AA seq
758 aa
AA seq
DB search
MDHMLAERILTFMRDEAYKPLTVEELEEAFGIADAEEFKTFVKTLVAMEEEGLVVRTRSN
RYGVPERMNLVRGKVTGHPKGFAFVTPEEPGLDDIFIPPSELKNAMHGDTVLVRVQADSS
GARREGTIVRILERGVKEVVGTYTESKYFGFVIPDDKRIVNDIFIPKNAANGAVEGHKVV
VRLTSYPEGRMSAEGEVVQILGHKNDPGVDILAIIYKYGLPLQFPEDVIEHANRVPDVIT
EKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFPS
VIRTAERMTYSDVNKILVDKDEALREKYGPLVPMFELMAELADILRAKRMKRGAIDFDFK
EAKVLVDENGKPYDVVLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHEDPKPE
KLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQARYDAE
SLGHYGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGQMDLDTQQKWAEKLPEIAEHAS
DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT
DDYYRYDERHYALIGERTGKMYRIGDEITVRVINVNKDERIVDFEVVGMKGRRPPKAKAA
PVVIEGKKQKKGKAKAEPKAQSGSNRSAKPKKKKKKKR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggatcatatgttggccgaacgcattttaacatttatgcgcgatgaggcgtacaaaccg
ctgaccgttgaggaactggaggaagcgtttgggattgcggatgctgaggagtttaaaacg
tttgtcaaaacgcttgtcgccatggaagaggaaggtcttgtcgtccgtacgcgcagcaac
cgctacggcgtgcctgagcggatgaatctcgtgcgcggcaaagtgaccggccacccgaaa
ggattcgcgtttgtcacaccggaggagccgggactggatgatattttcatcccgccgtcc
gaattgaaaaacgcgatgcatggcgacacggtgcttgtgcgcgtccaagccgattcatct
ggggcgcgccgcgaaggaacgatcgtccgcattttggagcgcggggtgaaagaggtcgtc
ggcacgtacacggaaagcaaatatttcggctttgtcatcccggatgacaaacggatcgtc
aatgacattttcatcccgaaaaacgcggcgaacggcgcggtcgaagggcataaagtcgtc
gtccggctcacctcgtacccggaaggacgaatgagcgctgaaggggaagtcgtgcaaatt
ctcggccataaaaacgacccgggcgtcgacattttggcgatcatctataaatacggcctt
ccgcttcaatttccagaagacgtgatcgagcacgccaaccgggtgccggacgtcattacg
gagaaagacttggaagggcgccgcgatttgcgcggcgagatgatcgtcacgatcgacggg
gaagatgcgaaggatttggatgacgcggtgaccgtgacgaagcttgaaaacggcaactat
aagctcggcgttcatatcgccgatgtcagctactatgttgaggaaggctcgcctattgac
cgcgaggcgtatgaacgcggcacgagcgtttatttggttgaccgcgtcatcccgatgatc
ccgcatcggctgtcgaacggcatttgctcgctcaacccgaaagtcgatcggctgacgctc
tcgtgcgaaatggaaatcaccccgcaaggagaagtcgtccgccatgaaattttcccaagc
gtcatccgcacggcggaacggatgacgtattccgatgtcaataaaattctcgttgacaaa
gacgaagccttgcgggaaaaatatgggccgcttgtgccgatgtttgagctgatggctgag
cttgctgacattttgcgggcgaagcggatgaagcgcggggcgattgatttcgattttaag
gaggcgaaggtgcttgtcgatgaaaacggcaagccgtacgatgtcgtcttgcgcgagcgg
tcggtcgctgagcggttgattgaagagtttatgctggcggcgaacgaaacggtggctgag
catttccattggttgaacgtgccatttatttaccgtgttcacgaggatccgaagccggaa
aaactgcagcgctttttagagttcatcacgaacttcggctatgtcgtgaaaggaacgggc
aaccaaatccatccgcgcgccctccagcaaattctcgaagcggtgcgcggcgagccggaa
gaaatggtgatctcgaccgtcatgcttcggtcgatgaaacaggcgcgctatgacgccgag
agcctcggccattacggcctgtcgaccgagttttacacccattttacgtcaccgatccgc
cgctacccggatttgatcgtccatcggttgatccggacgtatctcattaacggccagatg
gatcttgacacccagcaaaaatgggcggaaaagctgcctgaaattgcggaacacgcttcc
gatatggagcggcgcgccgttgaggcggagcgggagacggacgatctgaagaaaaccgag
tttatggaagacaaaatcgggatggagtttgatggcattatcagctcggtgacgaacttc
ggcttgttcgttgagctgccgaacacgatcgaaggcttggtgcacgtcagctacttaacg
gacgactattaccgctacgacgaacgccactacgcgttgatcggcgaacggaccgggaaa
atgtaccgcatcggcgatgaaatcaccgtccgcgtcatcaacgtgaacaaagacgaacgg
atcgtcgattttgaagtcgtcggcatgaagggacgccgtccgccgaaagcgaaagccgct
ccggtcgtcattgaagggaaaaagcaaaagaaaggaaaagcgaaggcggagccgaaagcg
caaagcggctcaaaccgcagcgcgaagccgaaaaagaagaaaaagaaaaaacggtga
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