Gymnodinialimonas sp. 57CJ19: AADW23_03435
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Entry
AADW23_03435 CDS
T10345
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gyj Gymnodinialimonas sp. 57CJ19
Pathway
gyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AADW23_03435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gyj03019
]
AADW23_03435
Enzymes [BR:
gyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AADW23_03435
Messenger RNA biogenesis [BR:
gyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AADW23_03435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WZN79347
LinkDB
All DBs
Position
685937..687253
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AA seq
438 aa
AA seq
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MFDFDMLGLKPILAKTLKEAGFKEPTPIQNQAIPIALDGHDIMGLAQTGTGKTLAFGLPL
MEHLLSLHGKPEPKTARALILAPTRELVNQIADNLRVFSNSTPVKITTVVGGQSIGRQIS
VLSRGTDILVATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLDMGFIHALRKIAPALGTP
RQTMLFSATMPKQMEELAGAYLNNPKRVQVSPPGKAADKVTQSVHFMPKPAKPAKLREVL
DQDPDALVLVFGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGQIKILV
ATDVAARGIDIPGVAYVINYELPDTPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLVQI
EKLMKITIPVASGTRPEAVKVEKPQRGGRRRGGGGGGRPGGGGGGGRKPQGKSGGGNGGG
GGNGQARKPRRPRRSKAA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgattttgatatgctcggcttgaagccgatccttgcgaagaccctgaaagaggcc
ggctttaaagagcctacaccaatccagaaccaagccattccaatcgccctggatggtcac
gacatcatgggccttgcccaaaccggcaccggcaagacgctggcatttggccttccgttg
atggagcatcttctgtctctgcacggcaagcccgagccgaagacggcccgcgccctgatc
cttgctccgacacgagagctggtgaaccagatcgccgacaacctgcgcgtgttctccaac
agcacaccggtaaagatcacgaccgttgtggggggccaaagcattggccgccagatcagc
gttctgtcacgcggcaccgatattcttgtcgccacacccggccgcctgatggacctgatg
gaccgtcgcgcgattgatctttcgaccgtgaagcaccttgtgctggatgaagcggaccag
atgctcgacatgggattcatccatgccctgcgcaaaattgcgcccgctcttgggacacca
cgccagaccatgctgttttcggctaccatgcccaagcagatggaagaacttgccggtgcc
tatctgaacaaccccaagcgggttcaggtctcacctcccggtaaggccgcggacaaggtc
acgcagtcggtgcatttcatgcccaagcccgcgaaacctgcgaagctgcgcgaagtgctg
gaccaggatcccgatgcgctggtgctggtcttcggtcgcaccaagcatggctgtgaaaag
ctgatgaagggccttgtggcagacggctacaacgccgcctccatccacggcaacaaaagc
caaggtcagcgcgaccgcgcgatcaaggcgttccgtgatggtcagatcaagatccttgtg
gcgaccgatgtggccgcacggggcatcgacatccccggcgtggcgtatgtcatcaactat
gagcttcccgacacgcccgacaattacgtgcaccgcattggccggacggcccgtgccggt
cgtgagggtgaagcgattgcgttctgttccgccgaagaagtcgatctgttggtgcagatt
gagaagctgatgaagatcactatccccgtagcctctggcacacggcccgaagcggtgaag
gttgagaaacctcagcgcggtgggcggcgtcgtggcggcggtggtggtggtcgtcccggt
ggcggtggcggcggcggtcgcaagcctcagggcaaaagcggcggcggcaatggtggcggc
ggcggcaatggccaggcccgcaaacctcggcggccccgccgcagcaaagcggcctaa
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