Gymnodinialimonas sp. 57CJ19: AADW23_03615
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Entry
AADW23_03615 CDS
T10345
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gyj Gymnodinialimonas sp. 57CJ19
Pathway
gyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AADW23_03615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gyj03021
]
AADW23_03615 (rho)
03019 Messenger RNA biogenesis [BR:
gyj03019
]
AADW23_03615 (rho)
Transcription machinery [BR:
gyj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AADW23_03615 (rho)
Messenger RNA biogenesis [BR:
gyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AADW23_03615 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
OB_RNB
AAA_25
ATPase_2
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WZN79383
LinkDB
All DBs
Position
721427..722698
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AA seq
423 aa
AA seq
DB search
MTVETLRLADLKAKAAKDLLPMAEELEIENASTMRKGDMMFEILRERAEEGWEISGDGVL
EVLQDGFGFLRSPEANYLAGPDDIYVSPDMIRQHSLRTGDTVEGVMSAPKENERYFCLVN
VTQINFEEPEKAKHKVAFDNLTPLYPDERMNMEIEDPTIKDRSARIIDLVSPIGKGQRSL
IVAPPRTGKTVLLQNIAHSIETNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKIADKRVY
PAMDILKSGTRKEDLLVDKGDLQKTFVLRRILNPMGTTDAIEFLISKLKQTKTNSEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgaaacgcttcgtcttgctgacctgaaagcgaaagccgctaaagatcttttg
cccatggcagaagaacttgagatcgagaacgcctctaccatgcggaagggggatatgatg
ttcgagatcctccgcgaacgcgcggaagaaggttgggagatttccggcgacggtgtgttg
gaagtgttgcaggatggttttggtttcttgcggagccccgaggcaaactacctggctggt
cctgatgatatctatgtgtcgccagacatgatccgccagcactcgctgcgtaccggtgat
accgttgaaggtgtcatgtcagcgccgaaagagaacgagcgctatttctgcttggtgaac
gtcactcagatcaactttgaagagccagagaaggcgaagcacaaggttgcgtttgataac
ctgacgccgctttatccggacgagcggatgaatatggagatcgaagacccaacgatcaaa
gaccgctctgcgcggatcattgatttggtgtctccgatcggcaagggtcagcggagcttg
atcgtggccccgccgcggaccggtaagacggttttgttgcagaatatcgcccattcgatc
gagaccaatcaccccgaatgctatttgatcgttttgctgatcgacgagcggccggaagag
gtgacggacatgcaacgctcggtgaagggggaagtgatttcctcgacctttgatgagcct
gcaacgcgccatgttgccgtgtctgagatggtgattgagaaggccaagcgcctggtagag
cacaagcgggacgttgtgatcttgctcgattcgatcacgcgactgggtcgcgcgttcaac
acggttgtgccatcgtccggtaaggttctgacaggtggtgtggatgccaacgctctacaa
cgccctaagcgtttcttcggtgcggcgcggaatattgaagagggtggctcgttgacgatc
atcgcgaccgcgctgatcgataccggcagccggatggacgaggtcattttcgaggaattc
aaaggcaccggtaacagcgaaatcgtcctggatcgcaagattgcagacaaacgcgtgtat
ccggcgatggatatccttaaatccgggacacggaaggaagacctgttggtcgacaagggc
gacttgcagaagacatttgttctgcgacgtattctgaacccgatggggacgacggatgcg
atcgagttcctgatttccaagttgaagcagacgaagaccaactcagagttctttgactct
atgaacacctaa
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