Gymnodinialimonas sp. 57CJ19: AADW23_05495
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Entry
AADW23_05495 CDS
T10345
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gyj Gymnodinialimonas sp. 57CJ19
Pathway
gyj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gyj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AADW23_05495 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gyj03021
]
AADW23_05495 (rpoB)
03400 DNA repair and recombination proteins [BR:
gyj03400
]
AADW23_05495 (rpoB)
Enzymes [BR:
gyj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AADW23_05495 (rpoB)
Transcription machinery [BR:
gyj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AADW23_05495 (rpoB)
DNA repair and recombination proteins [BR:
gyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AADW23_05495 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF6888
IniB
Motif
Other DBs
NCBI-ProteinID:
WZN79743
LinkDB
All DBs
Position
1102995..1107134
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTYAGQKRIRKFYGKIDEVLAMPNLIEVQKSSYDLFLKSGDQLEPMDGEGIKGVFQSV
FPIKDFNETAILEFVKYELETPKFDVEECQQRDLTYAAPLKVTLRLIVFDIDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFSRIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVNYKLVK
GEGWSTKFFPERVRGTRPVADLVDAKTGEVIAEAGKKVTPRAVKKWIEEGEIENLLVPFD
GIIGRFAAKDIINEETGAIYVEAGDELTWEIGKDGEVSGGTLKELIDAGITDIPVLDIDN
VNVGPYMRNTLAVDKNLNREGALMDIYRVMRPGEPPTVEAASNLFDQLFFDSERYDLSAV
GRVKMNMRLDLDAEDTMRTLRKEDIIACIKALVELRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATYAR
VNKYGFIETPYRRVNDAVVSDDVVYMSATEEMRHTVAQANANLDEDGKFVNDMVNTRMSG
EYTLNPREAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADAPYV
GTGIEAVVAKDSGAAIMAKRGGVIDQVDAQRIVIRATEDLELGDAGVDIYRLRKFQRSNQ
NTCINQRPLVKVGDKVGKDEVIADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILISER
ISRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTIVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELVILERNIYARLRGMILGKTAVKGPKGVKADTVITEEL
LDGQLSRGQWWQLALEDEQDAAQIEALNRQFDTQKRALDHRFEDKVEKVRRGDDLPPGVM
KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM
NVGQILETHMGWAARGMGLQIDEALDEYRRHGDLTPVREALKIAYGDDVYEEAFASRDEE
SLLEAAGNVTKGVPIATPVFDGAKEADVNDALVRAGFSTSGQSKLFDGRTGEQFAREVTV
GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEGEE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaacttacgcaggccagaaacgtatccgcaaattctacggaaaaatcgacgag
gttctggcaatgccgaacctgatcgaggtgcagaagtcgtcctacgacctgttcctcaaa
tctggtgaccagctggagccgatggacggcgaaggcatcaagggtgttttccagtcggtt
ttcccgatcaaggatttcaacgaaacggcaatcctggagttcgtgaaatacgaactggag
acgcccaaattcgatgttgaggagtgccagcagcgcgacctcacttacgccgcgcccctg
aaggtgacgctgcggctcatcgtgtttgatatcgacgaggacacaggtgccaagtcggtc
aaggacatcaaggaacaagacgtgttcatgggcgacatgcccctgatgacgccaaacggg
acgttcgttgtgaacggcaccgagcgtgtgatcgtatcccagatgcaccgctcgcccggc
gtgttcttcgatcacgacaaaggcaagacccactcgtccggcaagctgctgttcgcctgc
cgcatcatcccctaccgcggttcctggttggacttcgagtttgacgccaaagacatcgtc
ttctcgcgcatcgaccgccgtcgaaagctgcctgtcacgaccctgctgtatgctctgggt
ctggaccaggaaggcatcatggatgcctattacgacacggttaactacaagctggttaaa
ggcgaaggttggtccacgaagttcttcccggaacgtgttcgtggcacacgccctgtcgct
gatctggtggacgccaagaccggtgaagtgattgccgaagctggcaagaaggttaccccg
cgcgcggtcaagaagtggatcgaagagggcgaaatcgaaaacctgctggtgcctttcgac
ggtatcatcggtcgcttcgcagccaaggacatcatcaacgaagaaaccggcgccatttac
gtggaagccggtgacgaattgacgtgggagatcggcaaagacggcgaagtcagcggcgga
acgctgaaagagctgatcgacgcgggtatcacggacatcccggttctcgacatcgataac
gtcaatgtcggcccttacatgcgcaacacgctggctgtggacaagaacctcaaccgtgaa
ggcgcgttgatggacatctaccgcgtcatgcgtccgggcgagccgcccaccgttgaagct
gcgtcgaacctgttcgaccaattgttcttcgatagcgagcgctatgacctgtccgccgtt
ggccgggtgaagatgaatatgcgtctcgatttggacgcggaagacaccatgcgcaccctg
cgcaaggaagacatcatcgcctgcatcaaggcgctggtcgagctgcgcgacgggcgcggc
gacatcgacgacatcgaccacctcggcaaccgtcgtgtgcgttcggtcggcgagttgatg
gaaaaccagtaccgcgtcggcctgctccgcatggagcgcgcgatcaaggagcgtatgtcc
tcggtcgaaatcgacacggtgatgccgcaggacctgatcaacgccaagccagcagccgct
gccgtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccaaaccaacccg
ctctcggaagtgacgcacaagcgtcgtctttccgcgcttgggccaggtggtctgactcgt
gagcgtgcgggcttcgaggtgcgcgacgttcacccgacccactacggtcggatgtgcccg
attgaaacgccggaagggccgaacattggtctgatcaactcgctggccacctacgcccgc
gtgaacaaatacggcttcatcgaaacgccctatcgccgcgtgaacgacgctgtggtgtct
gacgacgtggtttatatgtccgcgaccgaagaaatgcgtcacaccgtggctcaggcgaac
gccaacctcgacgaggacggcaagttcgtcaacgacatggtcaacacgcggatgtccggc
gaatacacgctgaacccccgtgaagcgattgacctgatcgacgtttcgccaaagcagttg
gtctcggtcgcggcatccttgatccccttcctcgagaacgacgacgccaaccgcgcgttg
atgggatcgaacatgcaacgtcaggccgtgccgcttctgcaagcggatgcgccttacgtg
ggcaccgggatcgaggccgtggtggccaaggactccggcgccgcgatcatggcaaagcgg
ggcggtgttatcgaccaggtcgacgcacagcgtatcgttatccgggccaccgaagacctt
gagttgggcgacgcgggcgtggacatctaccgtctgcgcaagttccagcggtccaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtgggcgacaaggttggcaaagacgaa
gtgattgccgacggcccctccaccgatatcggtgaactggcactcggcaagaacgtggtc
gtcgcgttcatgccctggaacggctacaactacgaagactcgatcctgatttctgagcgt
atttcgcgtgatgacgtcttcacctcgatccacatcgaggaatttgaagtcgccgcccgt
gacacgaagcttgggccagaagagatcacccgtgacattcccaacgtcggtgaggaagcc
ctgcgcaacctcgacgaagcgggcatcgtctacatcggcgccgaagtggagccgggcgat
atccttgtgggtaagatcacgccgaagggcgaaagcccgatgacgccggaagaaaaactt
ctgcgcgccatctttggcgagaaagcctcggacgttcgtgacacctcgctgcgggtgaag
cccggcgactacggcacgatcgtggaagtgcgcgtcttcaaccgccacggtgtggagaag
gacgaacgtgccctccagatcgagcgggaagaagttgagcgtctggcccgtgaccgtgac
gacgagttggtgatccttgagcggaacatctacgcccgtctgcgcggcatgatccttggc
aaaaccgctgtgaaaggccccaaaggcgtaaaagccgatacggtcatcaccgaagagctg
ctggacggtcaattgtcccgcggtcagtggtggcagcttgctttggaagacgagcaggac
gcagctcagattgaggctttgaaccgacagttcgacacgcagaaacgcgcgctcgatcac
cggttcgaggacaaggtcgagaaggtccgtcgcggcgacgatctgcctccgggtgtgatg
aagatggtcaaagtcttcatcgccgtgaagcgcaagcttcagccgggcgataagatggcc
ggtcgtcacgggaacaaaggtgtgatttccaaggtggtcccaatggaggacatgccattc
cttgcggatggtacgccggtcgatttctgtctgaacccactgggcgttccttcgcggatg
aacgttggtcagatccttgaaacccacatgggttgggccgcacgcggcatgggtctgcaa
attgacgaagcgctggacgagtatcgccgccacggtgatctgaccccagtgcgtgaagcg
ctcaagatcgcttacggcgatgacgtctacgaagaggctttcgcatcccgtgatgaggaa
tcgcttctggaagcggcaggcaacgtcaccaaaggtgttccgattgcaacgcccgtcttt
gacggcgcgaaggaagcggatgtgaacgacgcgctggtccgcgctggcttctccacctcg
ggtcagtcgaaattgttcgacggccgcaccggtgagcagttcgcccgtgaagtgacggtg
ggtgtcaaatacctgctgaaactgcaccacttggtggacgacaagatccacgcccgttcc
acgggaccgtactcgcttgttacgcagcagccgctgggtggtaaggcgcagtttggtggt
cagcgcttcggtgagatggaagtttgggcccttgaagcctacggcgccgcctacaccttg
caggaaatgctgacggtgaagtcggatgacgtggcaggccggaccaaggtctacgagagc
atcgtcaagggtgaggacaacttcgaggctggcgtgccagaatcgttcaacgttctcgtc
aaagaggtccgcggtctgggcctcaacatggaactcctggatgcagagggtgaggagtga
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