Gymnodinialimonas sp. 57CJ19: AADW23_05500
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Entry
AADW23_05500 CDS
T10345
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gyj Gymnodinialimonas sp. 57CJ19
Pathway
gyj03020
RNA polymerase
Brite
Enzymes [BR:
gyj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AADW23_05500 (rpoC)
Transcription machinery [BR:
gyj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AADW23_05500 (rpoC)
DNA repair and recombination proteins [BR:
gyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AADW23_05500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WZN79744
LinkDB
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Position
1107228..1111442
Genome browser
AA seq
1404 aa
AA seq
DB search
MNQELTNNPFNPLTPPKAFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLQYGQLMGEEEFMDAQDAYGADAFQ
ANIGAEAIREMLSQIDLESEANQLREDLKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VMTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLAREGMVGEGMIFADVDEVRHAL
DAGEIHLHSKITARLPQIDEEGNEYMKRFETTPGRVLLGALLPLNAKAPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDSKWELVGEARD
QVKEFEQQYMDGLITQGEKYNKVIDSWSKVNDKVTDAMMGTISASKRDETGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMDDCGTENTIKAEAAVNDGEVVASLAERILGRT
AGEDVFIPGTEEIIVAKGELIDERKADAVEAAGVTTMQMRSPLTCEAEEGVCATCYGRDL
ARGTKVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEVNVDGKVEFRNAN
LLTNAAGENVVMGRNMVLAIMDDQGAERASFKLGYGTNVLVQEGAMVTRGDRLFEWDPYT
LPIIAEAAGQAKFVDLISGISIRDETDDATGMTQKIVSDWRTAPKGNELKPEIIIADADG
EPMRNEQGNPVIYTMSVDAILSIEEGQAVKAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVKFGRDFKNKRRIAIVPADESQEPVEYMVPKGKHIPVAEGDFVQ
VGDYIMDGNPAPHDILAVLGVEALADYMIAEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGETTLLKGEHVDKAEFDAANAKAVRDGRRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQEVERIAKSRDQVVVDAAQA
EAAAAAALAAPVVEEPTAEGDAAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaacccgctgacgccgccaaaggcattcgac
gagatcaaggtctcgctcgcttcgccagagcgcattctcagctggtcctacggtgaaatc
aagaagcccgagacgatcaactatcgtacgttcaagcccgagcgtgatggtctgttctgt
gctcggatctttggcccgatcaaagattacgaatgcctttgcggcaaatataaacggatg
aagtatcgcggcgttgtctgcgagaaatgcggtgtggaagtcacgctgcaaaaggtccgt
cgtgagcgtatgggccacatcgaactggccgcgcccgttgcgcacatctggttcctcaag
tcgctgccttcgcgcatcggcctgatgctggatatgactctgcgtgatctggaacgtatt
ctctacttcgagaactacgtggtgatcgagcctggcctgacggacctgcaatacggtcag
ttgatgggcgaggaagagttcatggacgcccaggacgcctacggcgccgatgcgttccag
gccaacatcggtgcggaagccatccgcgagatgctgtcccagattgatctcgagtccgag
gccaaccagctgcgcgaggacctcaaggaggctacgggtgagctgaagccgaagaagatc
atcaagcgtctgaagatcgtcgagtccttcctcgagtccggcaaccggcccgaatggatg
gtcatgaccgttgtgcccgtgatcccgccagagctgcgcccgctggtgccgctggatggg
ggccgtttcgcgacgtccgacctcaacgacctgtatcgccgcgtgatcaaccggaacaac
cgtctgaagcgtctgattgaacttcgcgcgccggacatcatcattcgtaacgaaaaacgg
atgttgcaggaatccgtcgacgctttgttcgacaacggccgtcgtggccgcgtgatcacc
ggtgccaacaagcgtccgctgaaatcgctgtccgacatgctgaagggcaagcagggtcgc
ttccgtcagaaccttttgggtaagcgcgtcgacttctcgggtcgttcggtcattgtgacc
ggtcccgagttgaagctgcaccagtgcggtctgccgaagaagatggcgttggagctgttc
aagccgttcatctactcgcgtcttgaggccaaaggtctgtcttccactgtgaagcaagcc
aagaagctggtcgaaaaagagcgtcccgaggtttgggatatcctcgacgaggttattcgt
gagcatccggttctgctgaaccgtgcgcctacgctgcaccgtcttggcatccaggcgttc
gagccggttctgatcgaaggtaaagcgatccagcttcacccgctggtctgttccgcgttc
aacgctgacttcgacggcgaccagatggccgttcacgtgccgctttcgctggaagcacag
ctggaagcccgcgttctgatgatgtccacgaacaacgttctgtcgcctgcaaacggcgcg
ccgatcattgttccgtcgcaggatatgatcctgggtctctactacgtcacgctggcccgt
gagggcatggttggcgaaggcatgatcttcgctgacgtggacgaagtgcgccacgcgttg
gatgccggtgaaatccacctgcactccaagatcacggcacgcctgccgcagatcgacgaa
gagggcaacgagtacatgaagcggttcgagacgaccccgggccgtgtgcttctgggtgcg
cttctgccgctgaacgccaaggcgccattcgatctggtgaaccgtcttcttcggaagaag
gaagtgcagcaggtcatcgacaccgtctaccgttattgcggtcagaaagagtcggtcatc
ttctgtgaccagatcatgacgatgggtttccgtgaagcgttcaaggcgggcatctcgttc
ggtaaggacgacatggtcatccccgacagcaagtgggaactggtcggcgaagcgcgcgat
caggtgaaggagttcgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaggtcatcgattcgtggtcgaaggtgaacgacaaggtcaccgacgccatgatgggc
acgatctcggcctccaagcgggacgagacgggcgcagagatggagccgaactcggtctac
atgatggcccactccggtgcgcgtggttctgtcacgcagatgaagcagttgggcggcatg
cgcggcctgatggccaagccgaacggcgagattatcgaaacgccgatcatctcgaacttt
aaagaaggccttacggttctcgaatacttcaactccacccacggtgcccggaagggtctg
tcggatacggcgttgaagacggcgaactcgggctacctgacgcgtcgtcttgtggacgtg
gcccaggactgcatcgtgcgtatggacgattgcggcaccgagaacacgatcaaggccgaa
gcggctgtcaacgacggtgaagtcgtggcgtcgctggctgagcgtattctgggccggact
gcgggtgaggatgtctttattccgggtacggaagagatcatcgtcgccaaaggtgagctg
atcgacgagcgcaaggccgacgcggtggaagccgctggcgtcaccaccatgcagatgcgt
tcgccgctgacctgtgaagcggaagagggcgtttgcgcgacctgctacggtcgtgacctt
gcacgcggtacgaaggtgaacaccggcgaagccgtgggcatcatcgcggcgcagtcgatt
ggtgagcccggcacacagctgacgatgcggacgttccacatcggcggtgttgcgcagggt
ggccagcagtcgttccaagaggtgaacgtcgacggtaaggtcgagttccgcaacgcgaac
ttgctgaccaacgcggctggcgagaacgtggtgatgggccggaacatggttctggcgatc
atggacgatcaaggtgcggaacgcgcctcgttcaagcttggctacggtaccaacgttctt
gtgcaagaaggcgcaatggttacccgtggcgaccgtctgttcgaatgggatccctacacc
ctgccgatcatcgcggaagcagcgggtcaggcgaagttcgttgaccttatctccggcatt
tcgatccgggatgagaccgatgacgcgacaggcatgacccagaagatcgtctcggattgg
cgcacggcccctaaaggcaatgagctgaagcccgagatcatcatcgccgatgccgatggg
gagccgatgcggaatgagcagggcaaccctgtgatctacaccatgtcggtggatgcgatt
ttgtcgatcgaagaaggtcaggcggtcaaagccggtgacgtgattgcgcgtatccctcgg
gaaggtgcgaagacgaaggacattaccggtggtctgccgcgtgtggccgaactcttcgaa
gcccgtcgtcccaaggatcacgcgatcatcgcggaaatcgacggctacgtgaaattcgga
cgcgacttcaagaacaagcgccggattgccatcgtacccgccgacgaaagccaggagccg
gtggaatacatggtgcccaagggcaagcacattcctgtggccgaaggcgacttcgtgcag
gtcggtgactacatcatggacggcaaccctgcgccccacgacatccttgcggtgttgggt
gtggaggctctggccgactacatgatcgccgaggtgcaggacgtgtaccgacttcagggc
gtgaagatcaacgataagcacatcgaggttatcgttcgtcagatgctccagaagtgggag
atccaggactccggtgagaccacgctgctcaagggcgagcacgtggacaaggccgagttc
gatgccgccaacgcgaaggctgtccgtgatggtcgtcgtccggcacagggggagccgatc
cttctgggtatcaccaaggcgtcgctgcaaacccgcagcttcatctctgccgcgtccttc
caggaaaccacgcgcgtgctgaccgaggcttcggttcagggcaagcgggacaagctggtt
ggcctgaaagagaacgtcatcgtgggtcgtctgatcccggcgggcaccggtggtgcgacg
caagaggtcgagcggattgcgaaatcccgtgaccaagtggttgttgatgcggcgcaagcc
gaagcagccgccgccgccgccctggccgctcctgttgtggaagaacccacagccgaaggt
gacgcagccgaataa
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