Gymnodinialimonas sp. 57CJ19: AADW23_08320
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Entry
AADW23_08320 CDS
T10345
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gyj Gymnodinialimonas sp. 57CJ19
Brite
KEGG Orthology (KO) [BR:
gyj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gyj03019
]
AADW23_08320 (hrpB)
Enzymes [BR:
gyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AADW23_08320 (hrpB)
Messenger RNA biogenesis [BR:
gyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AADW23_08320 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
WZN80532
LinkDB
All DBs
Position
complement(1699570..1701975)
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AA seq
801 aa
AA seq
DB search
MDLPIDVILPDLVAALRDQGRAVLQAPPGAGKTTRVPLALLPEVPGRILMLEPRRLAARA
AAERMAQTMGQDVGKTIGYRVRGDSAVGPDTRVEVVTEGILTRMLQDDPELPGVSAVIFD
EFHERSLNADLGLALTWEVRGALREDLWLVVMSATLDAAPVAALLDDAPLISSEGRAFPV
ETRWLSTPLHRDARFEASVADLVLQAMEEVAGGCLVFLPGEGEIRRVEGALKGRLPADVV
VRPLYGALKLAEQRAAIRPEPSGRKLVLATSIAETSLTIEDIRIVVDAGRARRARFDPGS
GMTRLVTDPVSRAEAAQRQGRAGRVAKGACYRMWTKGAEGALPAFPPAEIEAADLTSLAL
ELALWGSAEGLAFLTPPPAGAMAEAQALLHGQGALENGKITAHGRKLARLPLHPRLAHMV
AKGGSGAARLAALLAERDPLRGRGVDLKLRLKALDAPREFNANEGIIARVRQDAKRLRRY
EDGEKQSPGAQAALAYPDRIGLRRPGDQPRYVLSGGKGAVLPDGDGLSGARLIVATDLDG
NPREARIRMGVEVSERDVRALYGDQIAWENVCQWSRRHRRVEARQQERLGALVLDDKPWQ
DAPPEAMIGAAMDGIRDLGLAALGWNKRARLLRARVAFSGVADMSDERLLSALPDWAAPF
LVGVKNADDIARFDPAPALEAWLGWDALQEASRLAPEAWTTPMNRQIAIDYAGEVPEVSL
RLQEVFGTTVHPVVGPDRLPLKVTLLSPAQRPVQVTTDLPGFWDGSYADVRKEMRARYPR
HPWPEDPRQADPTLRVKPRGQ
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcccattgacgttattctgcccgatcttgtggccgccctgcgcgatcagggc
cgtgctgttttgcaagcgccgcccggtgccggcaaaaccacccgcgtgcccctggcgctc
ctgcccgaggtgccgggccgtatcctgatgctggaaccgcgccgccttgccgcccgcgcc
gccgcggaacgcatggcgcagaccatgggccaggacgtgggaaaaaccatcggctaccgg
gtgcgcggcgatagcgccgtggggccggacacaagggtcgaggtggtaaccgaaggcatc
ctgacccggatgttgcaggacgatccagaactgccgggcgtcagcgcggtcatcttcgat
gaattccacgaacggtctctgaatgcggacctcgggctggccctgacgtgggaggtgcgc
ggcgcgttacgcgaagacctgtggctggtggtcatgtccgccacgctggacgccgccccc
gtggccgctttgctggacgatgcgccgctgatctcgtccgagggccgcgcctttccggtt
gagacccgctggctctccacgccgcttcaccgggacgcgcgttttgaagcctccgtcgcc
gatctggtgctgcaagcgatggaggaggtcgcgggcggttgtttggtgttccttcccgga
gagggcgaaatccgccgggtagagggcgcgttgaaggggcgattgcccgcagatgtcgtg
gtgcgaccgctatatggggcgctgaaactggccgagcaacgcgccgcgatccggcccgag
ccatcggggcgcaagctggtgctggcgacgtcgattgcggaaacctcgttaacgatcgag
gacatacgcattgtggtggatgcaggccgcgcccgtcgcgcgcgcttcgaccccggatca
ggcatgacccggctggtaacagacccggtcagccgcgccgaagccgcgcaacgccaggga
cgcgcgggccgcgtggccaagggcgcgtgctatcggatgtggaccaagggcgcagagggc
gctttgcccgccttcccccccgccgagatcgaggccgccgacctgacctctctcgcgttg
gaactggcgctttggggcagcgccgaggggctcgccttcctgaccccgccgcccgcaggc
gcaatggccgaagcacaggcgttgttgcacgggcagggggccttggagaacggtaaaatc
accgcccatggacgcaagctggcgcgtttgccgctgcatccgcgtttggcgcatatggtc
gcgaagggcgggtccggcgcggcacggctggcggcgttgctggccgagagagatccgctc
agggggcgcggggtggacctgaaactgcgcctcaaggccctggacgccccgagggaattt
aacgccaacgaaggcatcatcgcccgcgtgcgccaagacgccaaacgcttgcggcgctac
gaggatggagagaaacaaagccccggcgcacaggccgccctggcctaccccgaccggatc
ggactgcgccgccccggagatcagccgcgctacgttttgtccggcggcaaaggcgcggtt
ctgcccgatggcgacgggctaagcggggcaaggctgatcgtggccacagatctggacggc
aacccgagagaggcccgcatccgcatgggcgtggaggtgtccgaaagggacgtcagggcg
ttatacggcgaccagatcgcttgggaaaacgtctgccaatggtccaggcggcaccgccgt
gtggaagcccgccagcaagagcgtcttggggcactggtgctggacgacaagccttggcaa
gacgcgccgcccgaggcgatgatcggagcggcgatggacggtatccgcgaccttggcctt
gcagcgctcggctggaacaaacgggcccgcctgctgcgggcgcgtgtggcgttttcgggg
gtggcggatatgtccgacgaacggctcctcagcgcgctgcccgattgggccgcccccttc
ctcgtcggcgtgaagaacgccgacgacattgcccggtttgacccggccccggcgctggaa
gcctggctcgggtgggacgcgctgcaagaggccagccgcctcgcgcccgaggcgtggacc
acgcccatgaaccggcaaatcgcgatagattacgccggtgaagtgcccgaagtgtcgctg
cgcctgcaagaggtgttcggcacgaccgtgcacccggtggttggccccgatcgcctgccc
ctgaaggtcacgctcctgtcgcccgcacaacgcccggtgcaggtcaccacagatctgccg
gggttttgggatggctcctacgctgatgtccgcaaggagatgcgcgcccgctacccgcgt
cacccttggcccgaagacccccgccaagcggacccgacattgcgggtcaaaccgcggggg
caatag
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