Paenibacillus sp. Y412MC10: GYMC10_1105
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Entry
GYMC10_1105 CDS
T01100
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC10_1105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gym03019
]
GYMC10_1105
Enzymes [BR:
gym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYMC10_1105
Messenger RNA biogenesis [BR:
gym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYMC10_1105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ACX63395
LinkDB
All DBs
Position
1306495..1308015
Genome browser
AA seq
506 aa
AA seq
DB search
MTFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI
QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER
ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK
KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELM
KDPSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFLRDI
EKLIGKSIPEVKDHAFPMSGALRAAKVDPTPKSGSSKPGKGRSAASRPAKPKADTARKPK
ADAARNPKTGAPRQSRQDAGIKPKTDAARQSKTNSARKPMTEAVTNPYSEMARKLSSEAA
SKPNNGQARKRKSGGFNKGSRAGRPS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaaaatttaaatatatcccctgtcattctcaaggctttggccaaggagaat
tacaaagcgccgacgcctatacaggctcaggcgatcccggctgtgctggccggcagagat
ttgctgggctgcgcccagaccggaacggggaagaccgccgctttttcggtgccgatgatc
cagctgttgaatcagcaaccccctaaaccgggcatggggcgccgcattcgcgcattggtg
ttgtcgccgacccgggagcttgccctgcaaatttcggataacgtcaaagcttacagccag
ttcaccaagctgcgttcgacggccattgttggcggcgtttcgcagaagacgcaggagcga
gcgcttcagcaaggagcggacatcctgattgcgaccccaggcaggctgctggacctcatg
aatcagaagcacgtcgatttgcagcatgtggagattttggtgctggatgaggccgaccgg
atgctggatatgggcttcatccatgacgtgaagcgaatcatcgccaaaatgccgagcaaa
aaacaaacgctgttcttctcggccacgatgcctgcggaaatcacccagcttgtccaaacc
ttgctgcacaatcccgtaaaagtcgagatcacgccggtctcctctacggccgaacggatc
gagcaatcggtgtacctgctggaaaccgggaataagcagcagcaattgaatgagctgatg
aaggacccttccatcgtgtcggcattggtctttacccgtacgaagcggggagctgaccgg
gttgcgcgcgggctgaacaaggtgaatattacggctcaggccattcacggcgacaaatcg
caaaccagccgccagacggcgctcaacaatttcaaaagcggggcgacccgcgtcctggtg
gcaacggatattgccgcgcggggaatcgacatcgacgagctgtcgcatgtcattaacttc
aacctcccgaacattccggaaacgtatgtgcaccggattgggcgcacggggcgcgcggga
ctgagcgggacggcgatatcgttttgcgaagtggacgaggttccttttcttcgggatatc
gagaagctaatcggaaagtccattccggaagtgaaggaccatgcctttccgatgtccggg
gcgttaagagccgccaaggtggacccgacgccaaaatccggctcgtccaagcccggcaaa
ggcaggtcagctgcatcgagacctgctaaaccgaaggcggatacggcccgcaaaccaaag
gccgacgcggcacgtaacccgaagacgggtgcaccccgccaatcaagacaagacgcggga
attaagccgaagacggacgccgcccgccaatccaagacgaactcggcgcgtaagcccatg
acggaagccgtcacgaatccatattcagagatggcacgcaagctgagttcggaagcagct
tcgaaacctaacaacggccaggcccggaaacgcaagtccggcggattcaacaagggaagc
agagccggcagaccttcataa
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