Paenibacillus sp. Y412MC10: GYMC10_4050
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Entry
GYMC10_4050 CDS
T01100
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gym
Paenibacillus sp. Y412MC10
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gym03019
]
GYMC10_4050
Enzymes [BR:
gym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GYMC10_4050
Messenger RNA biogenesis [BR:
gym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GYMC10_4050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Flavi_DEAD
HA2_C
DUF2551
PKMT_2nd
Motif
Other DBs
NCBI-ProteinID:
ACX66278
UniProt:
D3E619
LinkDB
All DBs
Position
complement(4628819..4631329)
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AA seq
836 aa
AA seq
DB search
MTELPIHRVLPQLKKALSTGTHAVLIAEPGAGKTTQVPLAFLNEPWLAGKRIIMLEPRRI
AARSAAGYMASSLGEAIGETIGYRVRMDSKIGRDTRIEVVTEGVLTRMLQDDPELTGIGM
IIFDEFHERNLQADAGLAFAMESQAVLREDLRLLVMSATLEAEPVAKLLGDAPVIVSEGR
AFPVTTRYLRSFPLDEIHKGAANAITRALSEQEGDILVFLPGAREIRRTANELLRTGLSA
EVVIRELYSALSAEKQDEAIKRDVNGRRKIVLSTSIAESSITIQGIKTVVDSGYMRTEVF
SPRTGLPQLITRRLSRASADQRRGRAGRVSAGVCYRLWSEEEHRHLPESTIPAIRESDLA
PLALELAVWGARDPEQLAWLDAPPRLAYTQGQALLKQLSALDDTGSITRHGREMALLGVH
PRLAHMLLKAQEIGEAPLAIRIAVLLQERDILSRSEALRDQDLRSRVERLLLFEQHGQRS
AQQDTANEAVLQRMKQEIRKLHAQLNIEYAADGDLNLCGLLLSFAYPDRIAKNRGGSGFL
MRSGRGVKLAAVQPMSRARYIVAAAVDDQGADGNIQLASEMDEVWLEQYYLDEMEQQKEV
AWDTASGSIRARQKLMLGAIVVKEQAYPNPTGEEIARALLQGIRQEGLGLFQWSKAAMQL
RERMAFMFRHEAEGDWPDVSDEGLLDRAEAWLLPYLDGLRNRNDIRRLAPGTLLEHMLSW
EQKQQLQNEAPTHIKVPSGSQIPINYSNPEQPFLAVRLQEMFGMRDTPRIAGGRVALTLH
LLSPAQRPVQVTSDLSSFWANGYYEVKKDLKGRYPKHYWPDDPLEAVATNRTRPKA
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgactgaactaccgattcaccgagtattaccgcaattgaaaaaggctttatcaacagga
actcatgccgtgttgatcgctgaaccgggtgcagggaagacgacgcaagtgccgcttgct
tttctgaatgaaccttggcttgccggcaaacggatcatcatgctggagcccagaaggatc
gcggcccgctcagcggcgggatatatggcgtcctcattgggagaagcgataggagaaacg
atcgggtaccgggtccggatggacagcaagatcggacgggacacccggatcgaggtcgtc
acggaaggcgttttgacgcggatgctgcaggatgatccggaattgaccggcatcggcatg
attatattcgacgaatttcatgagcggaatttgcaggccgatgccggactggcttttgcg
atggaatcccaagcggtgctgcgggaggatttaaggctgctggtcatgtccgctaccctt
gaggccgagccggttgcaaagctccttggagacgcaccggtcatcgtcagcgaagggcgt
gcttttccggtaacgactcgctatctgcgctcgttcccactggatgagatacataaaggt
gcggcaaacgccattacgcgcgcgctctccgaacaggaaggcgacatactcgtatttttg
ccaggtgctcgtgaaatcaggcggaccgcgaatgaattattaagaacgggcttaagcgca
gaagtcgtcattcgtgaattatacagcgcgctttcagcggagaagcaggatgaagccata
aaacgcgatgtgaacggaaggcgtaaaattgttctgtccacaagcatcgcggagagcagc
attaccattcaggggatcaaaaccgtcgtggacagcggttatatgcgaacagaggtattc
tccccgagaacgggactgccgcaattgatcacgaggcggctgtccagggcgtccgccgat
cagagaaggggcagggcaggccgcgtctcggccggcgtgtgttatcgcttgtggagtgag
gaagagcaccgccatctgccggagagtaccattccggcgatccgcgaatccgatctcgcg
ccgctggccttggaattggccgtatggggtgcgcgtgatccggagcagctcgcttggctt
gacgcgccgcctcggctggcctatacgcaaggtcaagcgttattgaagcagctatcggct
ctggatgatacgggcagcatcacccggcacggccgtgagatggcgctgcttggagttcat
ccgaggctggctcacatgctgctgaaggcacaggaaatcggcgaggccccgctagccatc
cgaatcgccgttctgcttcaggagcgcgatatactgagccgaagcgaagcgcttcgggac
caggatttgcgttcgcgcgtggaacggcttctcttgtttgaacagcatggacagcgatcc
gcccagcaggacacggcgaacgaagccgtgctgcagcggatgaaacaagagattcggaag
ctccatgcccagctgaatatcgaatatgcagctgacggtgacttgaacctctgcggcctg
ctgctgtcgtttgcctatccggatcggatcgcgaagaacaggggaggtagcgggtttctc
atgcgcagcggcaggggcgtgaagttggctgcggttcagcctatgagccgtgcccggtac
attgtggccgcagccgtagatgatcaaggtgcagacgggaatatccagctagcttccgaa
atggatgaagtctggcttgagcagtattatcttgacgagatggaacagcagaaagaagtc
gcatgggatacagcttccggcagcatcagggccaggcagaagctgatgctgggagccatc
gttgtcaaggaacaagcctatcccaatccgacaggggaggaaatagcgcgcgccttgctg
caagggatcaggcaggagggccttggcttatttcagtggagcaaggcggccatgcagctg
agagaacggatggcctttatgttccggcacgaagccgaaggggactggccggatgtatcg
gacgaaggattgctggatcgtgcggaagcgtggctgcttccttatttggacgggctgcgg
aatcgtaatgatatcaggcgactggcacccggaacgctcttggagcatatgctcagctgg
gagcagaagcagcagcttcagaatgaagcgccgacgcatatcaaggtgccgagcgggtcg
cagatcccgatcaactacagcaaccctgaacagccgtttctggccgttcgtctgcaggag
atgttcgggatgcgggacacgccgcggattgccggcgggcgcgttgcgctgaccttacat
ttgttgtcgcctgcgcagagaccggtccaggttacctccgatctgtcgagcttttgggca
aacgggtattacgaggtgaaaaaggatctaaagggtagatatcctaagcattattggcct
gatgatccgctggaggcggtcgcaacaaatcggaccagacccaaggcataa
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