Paenibacillus sp. Y412MC10: GYMC10_4137
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Entry
GYMC10_4137 CDS
T01100
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC10_4137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gym03019
]
GYMC10_4137
03016 Transfer RNA biogenesis [BR:
gym03016
]
GYMC10_4137
Enzymes [BR:
gym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GYMC10_4137
Messenger RNA biogenesis [BR:
gym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GYMC10_4137
Transfer RNA biogenesis [BR:
gym03016
]
Prokaryotic type
tRNA degradation factors
GYMC10_4137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
SPATA25
S1_2
DUF5877
DUF4191
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ACX66364
UniProt:
D3E6P1
LinkDB
All DBs
Position
complement(4715890..4717995)
Genome browser
AA seq
701 aa
AA seq
DB search
METRVEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CEPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTK
DAIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVN
REVREFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIV
KEEVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGD
VQILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDF
PYTIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDI
QGMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAI
QKPRETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSN
DEMNKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAK
VEDVVAIGDVITVKVTEIDQQGRINLSRKAVLTTEASKSGS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacgtgttgaaatgcagcttggcggaagacccctcgtgttcgaaacagggcgc
cttgcgaagcaggctaatgcggctgttatggttcgttacggcgaaacggcagtcctgtgt
acggtgacggcttccagtgaaccgaaggatctggatttctttccattgacggtcaactat
gaggagcgcttgtacgcagtcggtaaaattccgggtggattcatcaaacgcgaaggcaga
ccaagcgagaaggcgattcttgccagccgtctgacagaccgtccgattcgtccgctgttt
ccggaaggattccggaatgacgttcaagttctgaatctggtgatgagcgttgatcaggat
tgcgagccggaaattgcggccatgatcggtacctccgctgccttgagcatctcggacgtg
ccttttaacggtccgatcggcggcgtcgcggtgggtcgcgttgacggcaactttgtcgtg
aacccgaacattgcggaacaggaagcaagcgatatttatctggtcgtcgccggcaccaaa
gatgcgatcatgatggtcgaggccgaagcgaacgaagttcctgaggaagtcatgctggaa
gcgatcatgttcgggcatgaggaaatcaagaaaatcgtagccaagatcgaagagctggtg
gcagcttgcggcaaagagaaaatggcggttaagcttcatgcggtcaatgaaaccgtgaat
cgcgaagtgcgcgaatttgcggaagcccgtcttgttgaagccgttcgcattgaggagaaa
cacgctcgccaagatgcgattgacgctatcaacgacgaagcatacaccgtgttcgaagag
aaatacatcgagacacccgagttgttgaaggatgttaaagaggtccttcacgatatcgtg
aaagaagaagttcgccgtttgatcacgcacgataaagttcgtccggacggccgcggtctg
tctgagatccgtcctatcgattgcgataccagcctgctgcctagaacgcatggctccggt
ctgtttacgcgtggacaaacccaggctcttagcgtatgtacactaggtgctctaggcgat
gtacagattctcgatggaatcgatctggaagagaccaagcgcttcatgcaccattataac
ttcccgccgttcagcgttggggaagcgcgtccgcttcgcgctccgggccgtcgtgaaatc
ggtcacggtgcactgggtgaacgtgcattgtcgaaggtcattccgaatgaagtggatttc
ccgtacacgattcgcctcgtgtccgaggtgattgaatcgaacggttcgacatcccaagct
agcatttgcgcaagcacgcttgccatgatggacgcaggggtgccgatcaaagcgcctgta
gccggcgtggcgatgggcttgattaaagacggagaccacgtttccatcttgacggacatt
caagggatggaagaccatctcggcgacatggacttcaaagtggcaggtacgcctgacggg
gttaccgccattcagatggatatcaagatcgacggcatcgaccgcgcgattttgcaggaa
gcgctgcagcaggcaaaagaaggacgcatgcacatccttggaaaaatggcggaagccatt
caaaaaccaagagaaacgctgtcccaatatgcgcctaagatcattacgatgcagatcaac
ccggataaaatccgcgatgttatcggggccggcggcaaaatcatcaacaaaatcatcgaa
gagaccggcgtgaagatcgatatcgaacaagacggccgcgtattcatcgcatcgtccaac
gatgagatgaacaagaaggctctttcgattatcgaaggcatcgtgcgtgaggtggctgtt
ggcgaaatctatacaggtactgtaaaacggattgagaaattcggtgcatttgttgaaatc
ctgcctaacaaagacgggcttgtgcatatctcccaactctcgactgagcgcgtagcgaag
gtagaggacgtggttgcaatcggtgacgtcattaccgtgaaagttaccgaaatcgaccag
cagggacggattaacctgtctcgcaaagccgtgttgacaaccgaagccagcaagagcgga
tcttaa
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