Paenibacillus sp. Y412MC10: GYMC10_4607
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Entry
GYMC10_4607 CDS
T01100
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYMC10_4607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gym03019
]
GYMC10_4607
03009 Ribosome biogenesis [BR:
gym03009
]
GYMC10_4607
Enzymes [BR:
gym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYMC10_4607
Messenger RNA biogenesis [BR:
gym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYMC10_4607
Ribosome biogenesis [BR:
gym03009
]
Prokaryotic type
rRNA helicases
GYMC10_4607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ACX66828
UniProt:
D3EA63
LinkDB
All DBs
Position
complement(5204839..5206440)
Genome browser
AA seq
533 aa
AA seq
DB search
MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPL
IHKIAKEEERIVALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKRK
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTLL
FSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTR
HRIPRKPLPTIAEAIEGKQRIIAERVLEIIEQGELTEYKGLAIQLLEQYDSVQLLAAAMK
ILTGDKKEASDIHLTPEDPIRAKRRKPDIRNGRKPSGGYGGRGNSGGYRRDGGSGGGGNR
GGYSKGGYNRDGGGGYNRDRDGGGYNRDRNNSGDRKPRSYSGGERRPNRSGDE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaatttcgcagattttggcttggagccgcgcgtgctgcaagcaatcactgagctt
ggctttgaggaagccacaccgattcaatcccaatcgattccgattgctctaaccggcaag
gatatgattggacaagcacagactggtacaggtaagacagcagcattcggcctacctctt
atccacaaaatcgccaaggaagaggagcgtatcgtcgctctcattatgacaccgacccgt
gaacttgccattcaggttgctgaagaaatcggcaagctgtcccgttttaaaggaatccgt
tccttggctatttacggcggacaggatatcgggcgtcaaatccgcgctttgaaaagaaag
cctcagattattatcggtacaccgggtcgattacttgaccacatcaacagaaaaaccatc
cgtcttgatgacgtacaaaccgttgtattggacgaagcggatgaaatgctggacatgggc
ttcatggaagacatccagtcgatcctaaagcttgttcctgaagaacgtcaaaccttgctg
ttctccgcaactatgcccgctaacattcagaagttggcatcccagttcctaaaggaacct
gagcatgtatccgttattcctaagcacgttagtgctccactgatcgaccaagcatatatc
gaagttcctgaacgtcaaaaattcgaagccttgagccgccttctggatatggagtcgcct
gagcttgcgattgtcttcggacgtaccaagcgccgcgtcgacgaattggcagaagccctg
caaaaacgcggatattcggcagatggcctccatggcgacctgtcccagcaccaacgtgat
accgtcatgcgtaaattccgcgacggcagcatcgatgtgctcgtggcgacagacgtggca
gcgcgcggtctcgacgtatccggcgttacccatgtcgtaaactttgacttgccgcaagat
ccggaaagctatgtacaccgtattggacgtacgggccgtgcgggcaaggaaggtacagcc
tggtccttcgtgacgccgcgtgaaatggatcatctgtatttcatcgagcgtgtgacgcgc
caccgtattccgcgcaagccgctgccaacgattgccgaagcgatcgaaggtaaacagcgc
atcatcgctgagcgcgtgcttgaaattattgagcaaggggaattgaccgagtacaaaggt
cttgccattcaattgctggagcagtacgattccgtacaattgcttgcagctgcaatgaaa
atcctgacaggcgacaagaaggaagcatccgatattcaccttacccctgaggatccgatc
cgcgccaaacgccggaagccggatatccgtaatggccgcaagcctagcggcggttatggc
ggacgcggcaacagcggcggatatcgccgtgacggcggaagtggcggcggcggtaaccgt
ggcggctactccaaaggcggatacaaccgtgacggcggtggtggttacaaccgtgatcgc
gatggcggtggttacaaccgtgaccgcaacaacagcggtgaccgcaaaccgcgttcctac
agcggcggcgagcgtcgccctaaccggagcggagacgaataa
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