Paenibacillus sp. Y412MC10: GYMC10_4912
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Entry
GYMC10_4912 CDS
T01100
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03030
DNA replication
gym03410
Base excision repair
gym03420
Nucleotide excision repair
gym03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYMC10_4912
03410 Base excision repair
GYMC10_4912
03420 Nucleotide excision repair
GYMC10_4912
03440 Homologous recombination
GYMC10_4912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gym03032
]
GYMC10_4912
03400 DNA repair and recombination proteins [BR:
gym03400
]
GYMC10_4912
Enzymes [BR:
gym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GYMC10_4912
DNA replication proteins [BR:
gym03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GYMC10_4912
DNA repair and recombination proteins [BR:
gym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GYMC10_4912
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYMC10_4912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
DUF61
Motif
Other DBs
NCBI-ProteinID:
ACX67126
UniProt:
D3ECK2
LinkDB
All DBs
Position
complement(5567417..5570077)
Genome browser
AA seq
886 aa
AA seq
DB search
MDKLILIDGNNIIYRAFFAMPPLTNASGQQTNAVYGFTTMLLRLIEEHKPTHMMVAFDAG
KETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTITRQA
DEAGRKVMVVSGDKDMLQLASEHTTIAMVRKGVTEIEYYGPEQIKERYNLTPDQIIDLKG
LMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELKGKMKEKIEEHADSAILSKK
LATIFREVPLEQSLDEMAFTGLNEETAGPALAKLEFKSLIERLNLSTSGAPGDAAESKPE
AKIDVTLVDATGIAEVADHLAQVTVLHVETHGDNPHHADVIGLALATEERQYFLPFDVLK
SEEAEPVRAWLADSEIPKRGYDLHRIDLALHWQGIAFAGAAFDVHLAAYLLDPTESNQTL
SGLASKYGLAYLQADEDVFGKGAKYKVPDVEKLSEHMARKCLAVSELVPIQEKELAANEM
LPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEFNLNS
PKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEG
LLKEISSVTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSIL
AADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNF
GIVYGISDYGLSQNLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERR
RYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHD
ELVFEVPEDELEVMKELVPDVMSQALKLSVPLKSEVSYGENWYEAK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctgattctgattgatggaaataatatcatttaccgggcattctttgcgatg
ccgccgctgaccaatgccagcggacaacagacgaatgcggtttacggctttacgacgatg
ctgcttcgcttgatcgaggagcataaaccgacgcatatgatggtggcattcgatgccggc
aaggaaacattccgccatgcggattttcaggagtacaagggcggccgacaaaagaccccg
ccggagctttcaggacaattcccgctgctgaaagagctgctgaaaggcctgggtgtctcc
caattcgaaatcggcggttatgaggccgacgacattatcggtacgattacccgccaggct
gacgaagccggccgcaaggtgatggtcgtctccggggataaggatatgctgcagctggct
tcggagcataccacgatcgcgatggtccgcaaaggcgtcaccgaaatcgagtattacgga
ccggaacagattaaggagcggtataacctgacgcctgatcagattatcgaccttaaggga
ttgatgggcgatgcttccgataacattcccggcgttccgggagtaggggagaagaccgcg
ctgaagctgcttcatgaattcggatccgttgaagcggtggtgtcccggaccgatgagctg
aagggcaagatgaaagagaagattgaggagcatgcggattccgccatactcagcaaaaag
ctggctacgatcttccgcgaagtgccgctggaacagtcgcttgatgaaatggcatttacg
ggcctgaatgaagagacggctggtcccgcactggcgaagctcgagtttaaatcgcttatt
gaaaggttgaacctgagcacaagcggtgcccctggtgatgcggcggagtcgaagcccgaa
gcgaagatcgacgtgacccttgtggacgcgacgggaattgccgaggttgcggatcatctg
gcacaagtgaccgtgctccatgtggaaacgcatggggacaacccccatcatgcggacgtg
atcgggctggcactcgcgacggaggagcggcagtacttcctcccgtttgacgtgctgaag
tcggaagaggcggagcctgtccgtgcttggcttgccgatagcgagatcccaaaacgcggg
tatgacctgcaccgtattgacctggcgctgcattggcagggcatcgcttttgccggcgcg
gcattcgacgttcacctggcagcctacctgcttgatcctacggaatcgaatcaaaccctt
agcggtctggcctccaagtacggtctggcctatcttcaagccgatgaggacgtgttcggt
aaaggggccaagtacaaggttcccgatgtggagaagctcagcgagcacatggccagaaaa
tgcctggccgtatccgaactggttcccattcaggagaaggaactggctgccaatgaaatg
ctcccgctgttccatgatctggagatgccgctttcgcgcattctggccgatatggagaag
cagggaattgccgtgaatgcggaggatttgaaggagctgggacgcgagttcgaagggcag
atcgcgaagcttgttcaggagatctacgagatcgccggaacggaattcaatctcaattcg
cctaaacagctcggtgaaatcctgtttgtgaagctggagctgccggtcatcaagaagacc
aaaaccggttattccaccgatgccgaggtgctcgaaaagctggcgccttatcacgatatc
gtccgcctgattttacagtaccgtactttggccaagctgcaatccacttacgtggaagga
ctgctgaaggagatttcatccgtaaccggcaaagtgcatacctactatcgtcagaccatt
gccgctaccggccgtctgagcagccaatacccgaatttgcagaacattccgatccgtctg
gaggaagggcgcaagctgcgcaaggttttcgttccgtcggaaccgggctggagcattctg
gcggcggactactcccaaatcgagcttcgcgtgcttgcgcatatctcggacgacgaacgg
ctgaaggaagccttcgtccacgacatggacatccacaccaagacggcgatggacgtgttt
ggagtcggcatggatgaggtggactccaatatgcgccggtccgccaaggcggttaacttc
ggcatcgtgtatggaatcagcgactatggcctgtcccagaacctgaacattacgcggaag
gaagcggcagcatttatcgaccagtatttcgaggtgttccagggcgtgcggcgctatatg
gacgtgatcgtcaagcaggcgaagcaagacgggtatgtgaagaccttgctcgaacgcaga
cggtatctgccggagattaacgccagtaatttcaacctgcgctcttttgcggagcggacg
gcgatgaatacgccgattcagggaacggccgcggacatcatcaagctggccatggtccat
atggacaaggcgctccatgagcgccaattgaagagccgcatgctgctccaggtgcacgat
gaattggtgttcgaggtaccggaggatgagctggaggtcatgaaggaattggtgccggac
gtgatgagtcaggcgctgaagctgtccgtgccgctgaaatcggaagtcagctatggcgag
aactggtacgaggcgaagtaa
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