Geobacillus zalihae: IC807_13770
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Entry
IC807_13770 CDS
T07057
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gza
Geobacillus zalihae
Pathway
gza03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IC807_13770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gza03400
]
IC807_13770 (mfd)
Enzymes [BR:
gza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IC807_13770 (mfd)
DNA repair and recombination proteins [BR:
gza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IC807_13770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QNU17461
UniProt:
A0A7H1RT72
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All DBs
Position
2752174..2755707
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNL
FQAQKMYDDLVSLLGPEDVFLYSVNEVIAAEMAVASPELKAQRLEIMNHWVQGGKGVVVC
PVAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGI
IDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGI
ERIEAGLASSLETMKDEAAKQRMYEHIHAELEQLREGQEIEQQYKYMSLFYEKVASLLDY
LPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGGKMIHGVPLSHSFSELLQKHRFQR
VYLSLFLRHVPYAHPQNVVNITCKQMQNFHGQMALLQSEVERWTKANYAVVFLAPNAERV
KKLQSLLQDYEIDALPLARDAALLHGKCQLLEGDLNTGFELPLQKIAVITEEELFKKRVK
RPVRRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKRKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPIKVGLLNRFRTKKQQAETIK
GLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKETIERELARDGQVFFLYN
HIEDIDLKAEEIAQLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQPD
VVIDVEVDAYIPSTYIADELQKIEMYKRFKAVETLEDIEELREEMVDRFGDYPDEVAYLF
QIAELKVLAKQLGVESMKQHKQQIDILFTEPASKTVEIQRLSDIGRRHGRLFGFGMDGAK
LKIVLYIKEMKPHEWLMILEETLRRLSGVEKEKSVTA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgttgcatcgctatttagctgaaaaccaagatgtccgtacgatcattgaaggg
ctccatgtccgtttgaaggaacagcttgtcgccgggctgtccggatcggcccggtctgtt
tttatttccacgctttacaaggagacaggccggccgctgttagtcgtgtctcacaatttg
tttcaggcgcaaaaaatgtatgacgatctcgtttcgttgctcgggccggaagacgtgttc
ctttattcagtgaacgaagtgatcgccgctgagatggcggtcgccagcccggagctgaag
gcacagcgcttagagattatgaaccattgggtgcaaggcggaaaaggagtcgtcgtctgc
ccggtcgccggcttgcggcgtttgttgccgccgccgtcgctttggaagcagtatttgttc
accttctccgttggacaagagttcgatgtagaacgttgtaaacagaagtttgtgcaaatg
gggtacaaacgggtcggcaccgtttccgcccccggagagttcagcgtccgcggcggcatc
atcgacatttatccattgaccgctgagcttccgtaccgcatcgagctgtttgatacggaa
atcgaatcgattcggacgttcactcctgacgaccaacgttcgcaagggcaaatcgagcgc
atcatgatcgggccggccgatgaaatcattctcgatggtgagacgcggcgccgaggaatc
gagcggattgaagcgggacttgcgtcgagtttggagacgatgaaagatgaggccgccaaa
cagcggatgtatgaacatattcacgctgagcttgagcaattgcgcgaggggcaggaaatc
gagcaacaatataaatatatgtcccttttttatgaaaaggttgcgagtttgctagattac
ctgccagaagacggcgtgctgctcatggatgaaatgagccggctgcaagaggcggcggaa
cggttggaccgcgaagaggcggaatggtatacgagtttgcttgacggcgggaaaatgatt
catggcgtgccgctttcgcattcgttttctgaattattgcaaaaacatcgattccagcgg
gtatacttatcgttgtttttgcgccatgttccgtatgcccacccacaaaacgtcgtcaat
attacgtgcaaacagatgcaaaacttccatgggcaaatggcgcttcttcaatccgaagtc
gagcgatggacaaaggcaaactatgcggtcgtgtttttggcgccaaatgcagagcgggtg
aaaaagctgcaatcattgcttcaagattatgagattgacgcgctgccgctcgcgcgcgat
gcggctttgctgcatggcaaatgccagctccttgaaggagatttaaataccgggtttgaa
ttgccgttgcaaaaaattgccgtcatcacagaagaagagctgttcaaaaaacgggtcaaa
cgcccggtgcgccggcaaaagctgtccaacgccgagcggatcaaaagctacgccgaattg
caagtcggcgactacgtcgtccatgtcaaccatggcatcgggaaatatttaggcatcgag
acgttagaaatcaacggggtgcataaagactatattcatatccagtaccaaggcggcgat
acgctgtatgttccggtcgaccaaatcgatcaagtgcaaaaatacgtcggctcggaagga
aaagagccaaaaatttacaaactcggcggttcggaatggaaaaaggtcaaaaggaaagtg
gaatcatccgtccaggatattgctgaagatttaatcaagctgtacgccgagcgtgaggca
agcaaaggatatgcgttttcgccggacaccgagatgcagcgcgaatttgaagcggcgttt
ccgtatcaagagacggaagatcagcttcggtcgattgaggaaattaagcgtgatatggag
agcgacaaaccgatggaccgcctcctttgcggcgatgtcggctacgggaagacggaagtg
gcgttgcgggcggcgtttaaagccattatggacggcaaacaagtggcctttcttgtgccg
acgacgatcctagcccaacagcattacgaaacggtgcgcgaacggtttcaagggtttccg
atcaaggttggtctgttaaaccgatttcgcacgaaaaaacagcaagccgagacaatcaaa
gggttgaaggacggcacgatcgatatggtcatcggcacgcatcggctgctgtcgaaagac
gtgaagtttaaagatttaggcttgctcattatcgacgaggagcaacggtttggcgtggcg
cataaagaaaaaatcaagcagctgaaggcgaacatcgacgtgctcaccttaacggcgacg
ccgattccgcgtacgttgcatatgtcgatgatcggcgtgcgcgatttgtcgatcatcgag
acgccgcctgaaaaccgattcccggtgcaaacgtatgtcatggaatatacgcccgaactc
gtcaaagagacgattgaacgtgagctcgcccgcgacgggcaggtgtttttcctttacaac
catattgaagacatcgatttgaaagcggaagaaatcgcacagcttgtcccggaagcgcgc
gtcacttacgtgcatggccgcatgtcggaaacggagctcgaatcgaccattttggcgttt
ttggaagggcaatacgatgtgctggtgacgacgacgatcattgaaacgggcatcgatatt
ccgaatgtcaacacgctcatcgtctatgacgccgaccggatgggattgtcgcagctgtac
cagctgcgcgggcgcgtcggccgctccaaccgcgtcgcttatgcgtatttcacctatcgg
aaagataaagtgctcaatgaagcggcagaaaagcggctgcaagccattaaagagtttacc
gagctcggctctggttttaaaattgccatgcgcgatttgtcgatccgcggcgcgggcaac
attctcggcgccgaacagcatggctttatcgactcggtcggattcgatttgtattcgcaa
atgttgaaagaagcgatcgagaaacggcgcggcatcaagcgagaagacgagcagccggat
gtcgtcatcgatgtcgaagtcgacgcctatattccgagcacatacattgcagacgaattg
caaaagatcgagatgtacaagcgatttaaggcagtggagacgctcgaagacattgaggag
ctgcgtgaggaaatggtcgaccgcttcggcgattatccagatgaagttgcgtatttgttc
caaattgcggagttgaaggtgttggccaagcagcttggcgtcgaatcgatgaagcaacat
aagcagcaaattgacatcttgtttactgaaccggcatcgaaaacggtggaaatccagcgt
ctatctgacattggacgccggcatggccgcttattcgggtttggcatggacggagcgaag
ttgaaaattgtgctctatatcaaggaaatgaagccgcacgagtggctgatgattttagaa
gagacgctgcggcggctgtctggggtggaaaaagagaagtcggtgacggcataa
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