Halotalea alkalilenta: A5892_14470
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Entry
A5892_14470 CDS
T04333
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
haa
Halotalea alkalilenta
Pathway
haa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A5892_14470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haa03019
]
A5892_14470
03400 DNA repair and recombination proteins [BR:
haa03400
]
A5892_14470
Enzymes [BR:
haa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A5892_14470
Messenger RNA biogenesis [BR:
haa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A5892_14470
DNA repair and recombination proteins [BR:
haa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A5892_14470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ANF58530
UniProt:
A0A172YGW7
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All DBs
Position
3237009..3239015
Genome browser
AA seq
668 aa
AA seq
DB search
MSSETLDYALARHFGFEGLRPGQRAVIERLLEGRSVAAIFPTGAGKSLCYQLPALMLPHL
TLVISPLLALIKDQLAFLHAHGIAAASIDSSQSPDEGREVMRQAQAGELKILMISVERLR
NERFRRFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPEERERLGMPRTLLLTATATPP
VVEQMRERFSITADDVITTGFYRPNLELEVLPTAQAQRPQRLVEWLAPRAGHQAAVPQPS
IVYVTQQRSAEEVARLLTSNGIAARAYHAGLDSEERQTIQTAFKQGELNCIVATIAFGMG
IDKSDIRQVIHFDPPKSIENYSQEIGRAGRDGAPSTCLTLASREGLGVLENFIYGDTPER
SGIRCLLEELDALPRASSGERDWRFTLSALSQRTDIRPLPLKTLLVQLELLGVATPRFSH
FADYRFAQHEDDETLAGHFQGERRDFIALLLNNVRRARRWASVDFDRIDEAGRAAGLDAG
RGRVIAALEFFAQRGWIELEAKQLTEVYAVYAGSLDIEGLSLRLHDYFTQREHAELERLR
AVPALLESEHCLSHRLAAYFGDPRAPQHCGHCSVCHGRTARLPRPQPEPLPDRPRLSALC
APLHARLAERGNGHTPSATLLARFLCGLSSPLLTQLKARTLPGYGALATSPYAALHAHIT
TLALGRDE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagctctgagacgctcgattacgccctcgcccgtcacttcggcttcgagggcctccga
ccgggacagcgagcggtgatcgagcggctgctggagggccggtccgtggcggcgatcttt
cccaccggtgcaggcaagtcgctatgctatcaactgccagcgctgatgctgccgcacctg
accctggtgatatcgccgcttctcgccctgatcaaggatcagctcgccttcctgcatgcc
cacggcatcgccgcggcgagcatcgactcgagccaatcccccgacgagggccgcgaagtg
atgcgccaggcccaggccggcgagctcaagatcctgatgatctcggtggagaggctacgc
aacgagcgctttcgccggttcatctcgcaggtaccgatctcgctcctggtggtcgatgaa
gcccactgcatttccgagtgggggcacaacttccggccggactacctgaagctgccggag
gagcgcgaacgactcggcatgccgcgtacgctgctgctcaccgccacggcgaccccgccg
gtggtcgaacagatgcgcgagcgcttctccatcaccgccgatgacgtgatcaccacgggc
ttctatcgtcccaatctcgaactcgaagtgctgcccaccgcacaggcacagcgcccgcag
cgattggtcgaatggctcgctccgcgagccggtcaccaggccgccgtgccacaaccgagc
atcgtttacgtcacccagcagcgcagcgccgaagaggtcgccaggctactgaccagcaac
ggcatcgcggctcgcgcctaccatgcgggactggacagcgaagagcgacaaacgatccag
acggccttcaagcaaggggagctgaactgcatcgtcgccaccatcgcgttcggcatgggc
atcgataaaagcgacattcgccaggtgatccatttcgatccgcccaagtcgatcgagaat
tacagccaggagatcggtcgagccggacgcgacggagcaccctccacttgcctgacgctg
gcaagccgggagggcctgggagtactcgagaacttcatctacggtgacacgccagagcgc
agcggcatccgctgcctgctggaagaactggacgcactgccacgcgcaagcagcggagag
cgtgactggcgcttcaccctgagcgccctttcacagcgcaccgacattcgccccctgccg
ctcaaaaccttgctggtacaactggagctgctcggagtggcgacaccgcgcttctcccac
ttcgccgactaccgcttcgcccagcatgaagacgacgagacgctggcgggacatttccag
ggtgagcggcgcgatttcatcgccctgctgctgaacaacgtacgccgcgcgcggcgctgg
gccagcgtcgacttcgataggatcgacgaagccggccgagcggcaggtctggatgcggga
cggggtcgggtaatcgcggcgctcgaattctttgcccagcgcggctggatcgaactcgag
gcaaagcagctgacggaggtatacgcggtgtatgccgggtcgctggacatcgaaggcctc
agcctgcggctgcacgactatttcactcagcgcgagcatgcagagctcgagcggctccga
gcggtacctgcgctactggaaagcgagcactgcctcagccatcggctggcggcgtatttc
ggcgacccgcgggcaccacagcattgcggccattgctcggtgtgccacggcaggactgcc
cgtctgcccaggcctcaaccggagccgttgccggatcgaccgaggctctcggcgctatgc
gcgccgttgcatgcccggctggccgagcgaggcaatgggcatacacccagcgcaaccctg
ctggcccgctttctctgcggcctgagctcgccccttctgacccagctcaaggcccgcacc
ctgcccgggtacggcgcgctggcgacatctccctatgcggccctgcatgcccacatcacc
accctggcactcggtcgcgacgaatga
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