Halalkaliarchaeum sp. AArc-CO: AArcCO_0118
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Entry
AArcCO_0118 CDS
T09489
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
haaa
Halalkaliarchaeum sp. AArc-CO
Brite
KEGG Orthology (KO) [BR:
haaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haaa03016
]
AArcCO_0118 (ligT)
Enzymes [BR:
haaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AArcCO_0118 (ligT)
Transfer RNA biogenesis [BR:
haaa03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AArcCO_0118 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
UWG49450
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All DBs
Position
111110..111697
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AA seq
195 aa
AA seq
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MRLFFAVDLPDRLADEVAAVQDRLRDAAGLRFTDPEQAHLTLKFLGDVDSDRIDELETAA
NEVISNAAVEREDGTVEPVEPFEAEVGGLGVFPSIEYISVVWAGFRRGEAELTALHEALE
VETTALGFEPDDHEFTPHVTLARMDDARGKEIVQEVVRETDPTIGRFRVEDVRLTESTLT
PEGPEHDTVTRFELS
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgagactcttcttcgccgtcgacctgccggatcgactggccgacgaggtcgccgccgta
caggaccgactacgcgacgcggcggggctcaggttcaccgacccggaacaggcccatctc
acgctgaagttcctcggtgacgtcgactccgaccggatcgacgaactggaaacggccgca
aacgaggtgatctcgaacgccgccgtcgaacgcgaggacggtaccgtcgaaccggtcgaa
ccgttcgaagccgaggtcggtggcctcggggtgtttccctcgatcgagtacataagcgtc
gtgtgggcggggttccggcggggcgaggcggaactgacagcgctccacgaggcgctggag
gtagaaacgaccgcactcggattcgaacccgatgatcacgagttcaccccacacgtcacg
cttgccaggatggacgacgcccggggaaaggagattgtccaggaggtcgtccgggagacg
gatccgacgatcggccgatttcgagtcgaggacgttcgtctaacggagagcaccctcaca
cccgagggaccggagcacgacacggtgacacggttcgaactatcgtag
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