Halalkaliarchaeum sp. AArc-CO: AArcCO_0163
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Entry
AArcCO_0163 CDS
T09489
Symbol
rpa1-2
Name
(GenBank) ssDNA-binding replication factor A, large subunit
KO
K07466
replication factor A1
Organism
haaa
Halalkaliarchaeum sp. AArc-CO
Pathway
haaa03030
DNA replication
haaa03420
Nucleotide excision repair
haaa03430
Mismatch repair
haaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AArcCO_0163 (rpa1-2)
03420 Nucleotide excision repair
AArcCO_0163 (rpa1-2)
03430 Mismatch repair
AArcCO_0163 (rpa1-2)
03440 Homologous recombination
AArcCO_0163 (rpa1-2)
03460 Fanconi anemia pathway
AArcCO_0163 (rpa1-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
haaa03000
]
AArcCO_0163 (rpa1-2)
03032 DNA replication proteins [BR:
haaa03032
]
AArcCO_0163 (rpa1-2)
03400 DNA repair and recombination proteins [BR:
haaa03400
]
AArcCO_0163 (rpa1-2)
Transcription factors [BR:
haaa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
AArcCO_0163 (rpa1-2)
DNA replication proteins [BR:
haaa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
AArcCO_0163 (rpa1-2)
DNA repair and recombination proteins [BR:
haaa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
AArcCO_0163 (rpa1-2)
MMR (mismatch excision repair)
AArcCO_0163 (rpa1-2)
DSBR (double strand breaks repair)
HR (homologous recombination)
AArcCO_0163 (rpa1-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
Ssb-like_OB
OB_MEIOB_N
SSB
Motif
Other DBs
NCBI-ProteinID:
UWG49493
LinkDB
All DBs
Position
156791..158263
Genome browser
AA seq
490 aa
AA seq
DB search
MIEDVYEELETDVPLEEFRAAVEEKVEQMGGLADEETAAMLIAHDLRDEEVSGIADIEPG
MDEVKFLGKVVSIGDVRTFERDGEDEPDGRVCNVEVADETGRIRISLWDEAAGAAEDQLE
VGQVLRIAGRPTDGYDGVEVSVDKVEPDEEAEVDVEVLDTYRVEDLALGRSDVDLVGKVL
DTDSVRTFDRDDGSEGKVANLTLGDETGRVRVTLWDEQADLVEEFDPGETVEVVDGYVRE
RDGDLELHVGSRGDVERVDEDVEYVPETTDIADLEIDQTADIAGGVVETDPKRTFDRDDG
SQGQVRNVRIKDETGEIRVALWGEKADADVDLADHLLVTDAEIQDGWQDDLEASANWRST
VTVLNEEPAAGDATSAGSPTSEAQAVAGDAGGTGDAAGGLSAFADEGSTKAGSTNAGTTD
GTTQTAPDAGADAGETVEFTGTVVQAGNPVVLDDGRTTRNVETDATLRLGEEVTVRGEER
NGKIDADEVF
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaggacgtctacgaggagctggaaacggacgtcccgctcgaggagttccgggcc
gccgtcgaggagaaagtcgagcagatgggcgggctcgccgacgaggagacggcggcgatg
ctgatcgcgcacgacctccgcgacgaggaggtgagtggcatcgccgacatcgagccgggg
atggacgaggtgaagttcctcggcaaggtcgtctcgatcggcgacgtccggacgttcgag
cgtgacggcgaggacgaaccggacgggcgggtctgcaacgtcgaggtcgccgacgagacg
gggcgaatccggatctcgctgtgggacgaagccgccggtgcggccgaagaccagctcgag
gtcggccaggtgctccggatcgccggccggccgaccgacggctacgacggggtcgaggtg
agcgtcgacaaggtcgaacccgacgaggaggccgaggtcgatgtcgaagtcctcgacacc
taccgggtcgaggacctcgcgctggggcggtcggacgtcgacctcgtcggcaaggtgctg
gatacggattctgtccggacgttcgatcgggacgacggctcggaaggaaaggtcgcaaac
ctcacgctgggggacgagaccggccgcgtgcgggtgacgctgtgggacgaacaggccgac
ctggtcgaggagttcgacccgggggaaaccgtcgaggtggtcgacggctacgttcgggag
cgcgacggcgacctcgaactccacgtcggctcccggggcgacgtcgaacgcgtcgacgag
gacgtcgagtacgtcccggagacgaccgacatcgccgacctcgaaatcgaccagaccgcc
gacatcgccgggggcgtcgtcgagacggatcccaaacggacgttcgaccgggacgacggc
tcgcagggccaggttcgcaacgtccgaatcaaagacgagactggcgagatccgggtcgcg
ctgtggggcgagaaggccgacgccgacgtcgatctcgcggatcacctcctggtgaccgac
gccgagatccaggacggctggcaggacgatctcgaggcgtccgccaactggcgctcgacc
gtgaccgtcctgaacgaagagccggccgccggggacgcgacctccgctggttctcccacc
agcgaggcgcaggcggtcgccggcgacgccggcggaactggggacgcggcggggggcctc
tcggcgttcgccgacgagggatccacgaaggcgggatccacgaacgcaggaaccacggac
gggacgacccagaccgcacccgacgccggggctgacgccggcgagacagtcgagtttacg
ggaaccgtcgttcaggcggggaacccggtcgtcctcgacgacgggcgaacgacccgaaac
gtcgagacggacgcgacgctccgtctcggcgaggaagtgacggttcgcggcgaggagcgg
aacgggaagatcgacgccgacgaagtgttctga
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