Halalkaliarchaeum sp. AArc-CO: AArcCO_1062
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Entry
AArcCO_1062 CDS
T09489
Symbol
xpb
Name
(GenBank) ssDNA-dependent ATPase, helicase superfamily II
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
haaa
Halalkaliarchaeum sp. AArc-CO
Pathway
haaa03022
Basal transcription factors
haaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
haaa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AArcCO_1062 (xpb)
09124 Replication and repair
03420 Nucleotide excision repair
AArcCO_1062 (xpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haaa03021
]
AArcCO_1062 (xpb)
03400 DNA repair and recombination proteins [BR:
haaa03400
]
AArcCO_1062 (xpb)
Enzymes [BR:
haaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AArcCO_1062 (xpb)
Transcription machinery [BR:
haaa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AArcCO_1062 (xpb)
DNA repair and recombination proteins [BR:
haaa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AArcCO_1062 (xpb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF4283
AAA_22
EutK_C
MarR_2
AAA
AAA_30
HTH_PafC
Ribosomal_S25
AAA_11
TrmB
Motif
Other DBs
NCBI-ProteinID:
UWG50375
LinkDB
All DBs
Position
1062100..1064025
Genome browser
AA seq
641 aa
AA seq
DB search
MTDGGDPAAEGNAPDSDADGNAPDSDADGNAPDTDTEAEDTPLQLSRFLDVVEREERPVV
TAQRAARRLDCTQAQARDALDDLATRGEIERVDVETDPVVYYPTEWRKLARRERVVVFPT
RREIVVDQPTQYTRAQLSQFAHLVDTTGTEPGTRGYLYRVRPEDVWVAPFEEFEQLLSTV
RSVLPRRYSHLEAWMNDQWQRAHQFRLYTHEDGYVVLEAASESLMGNVATEKLDEDTIRA
PISDTEAWVNADRIAGIKRTLYDAGYPVVDDRKLETGDGLDVELTTDLREYQHSWVESFL
EKRAGVFVGPPGSGKTVAAIATITAVEGETLILVPSRELAEQWREELLAHTDLSREQIGA
YHGGEKRIRPITIATYQTAGMDRHRQLFDSRKWGLIVYDEVHHVPSDVYRRSADLQAVHR
LGLSATPVREDDSEAEIFTLIGPPIGTDWDALFEAGFVQEPELEIRYVPWREDTARNEYT
SADGRERYRLAAQNPAKLAEVEYLLARHDDRKALVFVDYLEQGERIAEALSVPFVSGDTP
HYRREQLFSQFREGERRTLVVSRIADEGIDLPDAEVAIVASGLGGSRRQGAQRAGRTMRP
AGSALVFVLATRGTREEEFARRQLRHLAGKGIRVRETNVSG
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggaggcgacccggccgccgaagggaacgcccccgacagcgacgctgacggg
aacgcccccgacagcgacgccgacgggaacgcccccgacaccgataccgaggctgaggac
acaccactccagctctctcggttcctcgacgtcgtcgagcgcgaagagcgtcccgtagtg
accgcccagcgggccgcccgccgactggactgcacccaggcacaggcccgggacgcgctg
gacgaccttgcaacgcggggagagatcgaacgggtcgacgtcgagaccgatccggtggtt
tactaccccacggagtggcgcaagctggcgcgccgggagcgggttgtcgtctttccgaca
cggagggagatcgtcgtcgatcagcccacccagtacacccgggcgcaactgtcgcagttc
gcccatctcgtggacacgaccggaaccgagcctggaacccgcggctatctgtaccgcgtt
cgacccgaggacgtctgggtcgcgccgttcgaggagttcgaacaactgctgtcgacggtc
cgatccgtgctcccgcggcgctattctcacctcgaagcgtggatgaacgaccagtggcaa
cgggcccaccagttccggctgtacacccacgaggacgggtacgtcgtgctcgaggccgcc
tccgagagtctgatgggcaacgtcgccacggagaaactcgacgaggatacgatccgggcg
ccgatttccgacacagaagcgtgggtcaacgccgaccggatcgccggaatcaagcggacg
ctgtacgacgccggctacccggtggtcgacgaccgcaaactggagaccggcgacgggctg
gacgtcgaactcaccactgacctgcgcgagtaccagcactcgtgggtcgagtcgttcctc
gaaaaacgggcaggggtgttcgtcggcccgcccggcagcgggaaaaccgtcgccgcgatc
gcgacgatcacggcagtcgagggggagacgttaatcctggtcccctcccgcgaactcgcc
gaacagtggcgggaggagctactggcacacacggatctctcgcgcgaacagatcggcgcg
taccacggcggcgaaaagcggatccgaccgatcacgatcgcgacctaccagaccgccgga
atggacagacatcgccaactgttcgactcccgcaagtggggattgatcgtctacgacgaa
gtgcaccacgtccccagcgacgtctaccgccgcagcgcggacctccaggcggtccaccgg
ctcgggctctcggcgaccccggtccgggaggacgatagcgaggcggagattttcacgctg
atcgggccgccgatcggcaccgactgggacgcgctgttcgaggcagggttcgtccaggag
cccgaactcgagatccggtacgtcccgtggcgcgaggacaccgcgcgaaacgagtacacg
agcgctgacggccgggagcggtaccggctcgccgcgcaaaaccctgccaaactggccgaa
gtcgagtacttgctcgccagacacgacgaccggaaggcgctcgtgttcgtcgactacctc
gagcagggcgagcggatcgccgaagcgctgtcggtgccgttcgtcagcggcgacacgccg
cattaccggcgcgagcaactgttctcgcagttccgcgaaggggagcgacggacgctcgtc
gtctcccggatcgccgacgaggggatcgacctgccggacgccgaggtggcgatcgtggcg
tcggggctgggcgggtcccgcagacagggggcccagcgggcgggccggacgatgcgcccg
gccggctcggcgctcgtgttcgtcctcgccacccgggggacccgcgaggaggagttcgcc
aggcggcagctccgccacctggcgggcaaggggatccgcgtgcgagagacgaacgtgagc
ggctga
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