Halalkaliarchaeum sp. AArc-CO: AArcCO_2162
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Entry
AArcCO_2162 CDS
T09489
Name
(GenBank) Topoisomerase DNA binding C4 zinc finger fused to uncharacterized N-terminal domain often associated with RecB-like endonuclease
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
haaa
Halalkaliarchaeum sp. AArc-CO
Brite
KEGG Orthology (KO) [BR:
haaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haaa03032
]
AArcCO_2162
03400 DNA repair and recombination proteins [BR:
haaa03400
]
AArcCO_2162
Enzymes [BR:
haaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AArcCO_2162
DNA replication proteins [BR:
haaa03032
]
Prokaryotic type
DNA Topoisomerases
AArcCO_2162
DNA repair and recombination proteins [BR:
haaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AArcCO_2162
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_Top1
NucS_N
HypA
Auto_anti-p27
Zn_ribbon_IS1595
DUF7351
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
UWG51456
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All DBs
Position
2131865..2132632
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AA seq
255 aa
AA seq
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MASELRLFAGACTTTFEGTRSRTQHGYVVVLVKPDDTVLVHDADGYQPVAWLTRPDEASV
ETTCDGTDTAHGGFTITAQTGDQRLTVESHGEGTVRTFPIGEAGVPVGECVATDCEGTLA
RTGGDVACVDCGERYGLPAGATVLDRQCDDCGLPQIRVDRGETFEVCLDYTCESLNDRIR
ERYDRAFDCPDCGSDLRIRVTDGRPFFGCEGYPDCETAFSIPAGVVVGLCDCGLPVFETA
TGRRCLDGTCDSYLE
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgaactcagactgttcgcgggagcgtgtacgaccaccttcgagggtacccgg
tcgagaacgcagcacggctacgtcgtcgtgctggtcaaaccggacgacaccgtgctcgtt
cacgacgcggacggctaccaaccggtggcgtggctcacccgacccgacgaggcgtccgtg
gagactacctgcgacggaacggacacggcccacggcgggtttacgatcacggcacaaacc
ggcgaccagcggctcaccgtcgagtcacacggcgaggggacagtccgaacgttcccgatc
ggtgaggcgggagttccggtgggcgagtgtgtcgcaaccgactgtgagggaacgctcgcg
agaacaggtggcgacgtcgcctgcgtcgactgcggggaacgctacgggctgccggcaggg
gcgaccgtactggaccgtcagtgtgacgactgcgggctcccgcagatccgcgtggaccgg
ggcgagacgttcgaggtgtgtctcgattacacctgcgagtcgctcaacgaccgaattcgg
gagcgatacgatcgcgcgttcgactgtcccgactgcgggagcgatctccggatccgggtc
acggacggccgcccattcttcggctgtgagggctatcccgactgcgagaccgccttctcg
atccccgccggcgtcgtcgtcggcctgtgcgactgcgggctgccggtcttcgagaccgcg
accggacggcgctgtctcgacggcacctgcgacagctatctcgagtga
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