Halalkaliarchaeum sp. AArc-CO: AArcCO_2252
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Entry
AArcCO_2252 CDS
T09489
Symbol
cdc48-3
Name
(GenBank) ATPase of the AAA+ class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
haaa
Halalkaliarchaeum sp. AArc-CO
Pathway
haaa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
haaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
AArcCO_2252 (cdc48-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haaa03019
]
AArcCO_2252 (cdc48-3)
03009 Ribosome biogenesis [BR:
haaa03009
]
AArcCO_2252 (cdc48-3)
04131 Membrane trafficking [BR:
haaa04131
]
AArcCO_2252 (cdc48-3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
haaa04147
]
AArcCO_2252 (cdc48-3)
Messenger RNA biogenesis [BR:
haaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
AArcCO_2252 (cdc48-3)
Ribosome biogenesis [BR:
haaa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
AArcCO_2252 (cdc48-3)
Membrane trafficking [BR:
haaa04131
]
SNARE
SNARE associated proteins
Others
AArcCO_2252 (cdc48-3)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
AArcCO_2252 (cdc48-3)
Exosome [BR:
haaa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
AArcCO_2252 (cdc48-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
TIP49
AAA_33
AAA_22
AAA_14
NPHP3_N
nSTAND3
AAA_28
RNA_helicase
AAA_7
Mg_chelatase
IstB_IS21
AAA_lid_PRS2_C
AAA_3
ABC_tran
DUF815
NB-ARC
AAA_18
SLFN-g3_helicase
Zeta_toxin
AAA_30
Parvo_NS1
Sigma54_activat
AAA_17
AAA_25
TsaE
AAA_11
PhoH
AAA_19
AAA_24
bpMoxR
Bac_DnaA
ATPase_2
Vps4_C
ATP-synt_ab
ResIII
Zot
Cytidylate_kin2
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
UWG51546
LinkDB
All DBs
Position
2236137..2238398
Genome browser
AA seq
753 aa
AA seq
DB search
MKLTVKPLKQKDAGRRLAAIDRVAAEEMGLSGGDFIRIESHEGTAVARVWPGYPEDDGTG
IVRIDGQLRQEANVGIDDRVTVEKADVEPAERVTIALPQRLGIRGNLESLIRRELGGRPV
TKGQSVQLPLGFGFIGGQSQAIPLKIASTTPSGTVVVTDSTEVEISQRPAEEIREAGPED
AADAPDVTYEDIGGLDEELEQVREMIELPMRHPELFKRLGIEPPKGVLLHGPPGTGKTLI
AKAVANEIDASFHTVSGPEIMSKYYGESEEQLREVFEEATEEAPAIIFMDELDSIAAKRE
EASGDVERRVVAQLLSLMDGLEERGQVVVIGATNRVDAIDPALRRGGRFDREIEIGVPDR
DGRKEILQVHTRNMPLADSVDLDEYAENTHGFVGADLESLAKEAAMTALRRIRPQLDLES
EEIDAEVLESIQVRKSDFKESLKGIEPSALREVFVEVPDVTWEDVGGLADTKERLRETIQ
WPLEYPEVFEELDIQSAKGVLMYGPPGTGKTLLAKAVANEAESNFISIKGPELLNKFVGE
SEKGVREVFSKARENAPTIVFFDEIDSIASERGSHTGDSGVSERVVSQLLTELDGLEALE
DVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEEARRAIIEVHTREKPLADDVDLDSL
ARRTEGYVGADLEAVCREAAMAASREFVHSVSPEEVGESVGNVRITADHFEQALDEVNPS
VTPETRERYEEIERQFKKSDVERDDAELGRTFQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcacagtcaaaccactcaaacagaaagacgccgggcgtcgcctcgcggcgatc
gatcgggtcgccgccgaggagatggggctttcgggcggagacttcatccgcatcgagagc
cacgagggcaccgccgtcgcgcgggtgtggcccggctacccggaggacgacggtacgggc
atcgtccggatcgacggccagcttcgacaggaggccaacgtcgggatcgacgaccgcgtg
accgtcgagaaggccgacgtcgaaccggccgagcgcgtcacgatcgcgttgccccagcgg
ctcggcatccgcggcaacctcgagtcgctcatccgtcgcgagctcggcggccggcccgtg
acgaaaggacagagcgtccagctcccgctcgggttcggcttcataggcggccagtcgcag
gcgatcccgctgaagatcgcctcgacgacgccgtcgggcacggtcgtggttacagactcg
acggaggtcgagatcagccaacgtcccgcagaggagatccgggaggccggaccggaggac
gccgcggacgcgcccgacgtcacctacgaggacatcggggggctcgacgaggagctcgag
caggtccgagagatgatcgagctgccgatgcggcaccccgagctgttcaagcggctcggc
atcgagccaccaaagggcgtcctcctgcacggcccgcccgggaccggaaagacgctgatc
gcgaaggcggtcgcaaacgagatcgacgcctccttccacacagtttccggcccggagatc
atgtcgaagtactacggcgagagcgaagagcagctccgggaggtgttcgaggaggccaca
gaggaggcgcccgcgatcatcttcatggacgagctcgactccatcgccgcaaagcgcgag
gaggcctccggtgacgtcgagcgccgggtcgtcgcacagctgctgtcgctgatggacggc
ctcgaagaacgcggacaggtggtcgtcatcggcgcgaccaaccgcgttgacgcgatcgat
cccgcgctgcgccgcggggggcggttcgaccgggagatcgagatcggcgtccccgaccgg
gacggccgcaaggagatcctccaggtccacacccggaacatgcccctcgccgacagcgtc
gacctcgacgagtacgccgagaacacccacggcttcgtcggcgccgacctcgagagcctc
gcaaaggaggcggcgatgaccgcactccggcggatccgcccgcagctggacctcgagagc
gaggagatcgacgccgaggtgctcgagtcgatacaggtccggaaaagcgacttcaaggag
tcgctgaaagggatcgaaccctcggcgctccgggaggtgttcgtggaggtccccgacgtc
acctgggaggacgtcggcggcctcgcggacaccaaagaacgcctccgcgagacgatccag
tggcccctcgagtatcccgaggtgttcgaggagctcgacatccagtcggccaagggcgtc
ctgatgtatggaccgccggggacgggcaagaccctgctcgcgaaggcggtcgccaacgag
gccgagtcgaacttcatctcgatcaaggggcccgaactgctcaacaagttcgtcggcgag
tcggagaagggcgtccgcgaggtgttctcgaaggcccgcgagaacgccccgacgatcgtc
ttcttcgacgagatcgattcgatcgcgagcgagcgcggcagccacaccggcgattcgggc
gtctccgagcgcgtcgtctcccagttgctgacggaactggacgggctggaggcgctggaa
gacgtcgtggtgatcgcgacgaccaaccggcctgacctgatcgactcggcgctgttgcgc
cccggccggctcgaccgtcacgtccacgtgcccgttcccgacgaggaggcccgccgggcg
atcatcgaggttcacactcgagagaagccactggcggacgacgtcgacctcgactcgctg
gcccggcggacggaggggtacgtcggcgccgatctcgaggcggtgtgtcgcgaggccgca
atggccgcctcccgggagttcgtccacagcgtctcccccgaggaggtcggcgagtcggtc
ggcaacgttcggatcaccgccgaccacttcgagcaggcgctcgacgaggtgaacccgagc
gtcacccccgaaacccgggagcgctacgaggagatcgaacggcagttcaaaaagagcgac
gtcgaacgcgacgacgccgaactgggccggacgttccagtag
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