Halocatena salina: MW046_00540
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Entry
MW046_00540 CDS
T08090
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
haad
Halocatena salina
Brite
KEGG Orthology (KO) [BR:
haad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haad03016
]
MW046_00540
Enzymes [BR:
haad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MW046_00540
Transfer RNA biogenesis [BR:
haad03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MW046_00540
Prokaryotic type
tRNA splicing ligases
MW046_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UPM42958
UniProt:
A0A8U0A3E3
LinkDB
All DBs
Position
complement(108182..109621)
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AA seq
479 aa
AA seq
DB search
MKQITGTHTDARFMVDDESLLESEVVDQVQELIDHPAFTEPIVMQADCHPGSGAPIGFTM
SLSDRIVPNIVGVDVGCGMAATNIGNELPCTDAERERRVRSAIPMGRSVHDYDDAPHLID
TFPFERANEVFDRFDNAYRERFGQEIDPIEFSFDGYDGAYFKSLCQRVLGGRSVGMGHVI
KSAGTLGGGNHFVEFARARESGEYWFVIHSGSRYLGMAVAQHWQSIATDRRNAAAVRESI
PQEYYEYLKFDPATVSDEKLHMWVTGGMGESPLKKERIRSEFEDAEVDRVFQALTNLHPE
DRNEALDWLEGREAHGYYVDMLFAQQYARWNRELMSEAICEALEIEPVETVSSIHNYIDF
EDLIVRKGATPAREGQRLVIPFNMADGSILARGRGNERYHRTAPHGAGRVMSRREAKENG
SMDAFTTAMDGVYSESVVEDVLDEAPMAYKSADAIAAAVEPTATIIDRLDVVHNLKALD
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagatcacgggaacgcacaccgacgctcgcttcatggtcgacgacgagtctctt
ctcgaatcggaggtcgtcgatcaagttcaagagctgatcgatcatccggcgttcaccgag
ccgatcgtgatgcaggccgactgtcaccccggctcgggcgcgccgatcggatttacgatg
tcgctgtccgatcgcatcgttccgaacatcgtcggcgtcgatgtcggctgtggtatggct
gcgacgaacatcgggaacgagctgccgtgtacggatgccgagcgcgagcgccgggtgcgc
tcggcgataccgatggggcggtcagtacacgattacgacgacgcaccgcacctgatcgat
accttcccgttcgagcgagccaacgaggtgttcgaccgattcgacaacgcctaccgcgag
cggttcggacaggagatcgatcccatcgaattctccttcgatgggtatgacggggcgtac
ttcaagtctctctgtcaacgcgtgctcggtgggcgatcggtcgggatgggtcacgtgatc
aaaagtgccggtaccctcggcggtgggaatcacttcgtcgagttcgctcgcgcgcgtgaa
tcgggagagtactggttcgtcattcacagcggctctcggtacctcgggatggcggtcgcc
cagcattggcagtcgatagcgaccgatcgtcggaacgcggcggcggttcgggaatcgatt
ccccaggagtactacgagtacctcaaattcgacccggcgacggtcagcgacgagaaacta
cacatgtgggtaacgggcggaatgggtgagtcgccgctcaagaaagaacggatccgttcg
gagttcgaggatgccgaggtcgatagagtgttccaagccctgacgaacctccaccccgag
gaccgaaacgaggcgctcgactggctcgaaggtcgagaagcccacggctactacgtcgac
atgctgttcgcacagcagtatgcccgctggaaccgtgaactgatgagcgaggcgatctgt
gaggcgctggagattgaaccggtcgaaaccgtatccagcattcacaactacatcgatttc
gaggatctgatcgttcggaaaggcgcaactccggcccgagaaggacaacgactcgtcatc
cccttcaatatggcggacggatcgatcctcgctcgcgggcgcggaaacgaacgctaccac
cgaactgctcctcacggtgccggtcgagtgatgagccgtcgggaggctaaagagaacggc
tcgatggacgccttcacgacggcgatggacggagtgtactccgaatcagtggtcgaagac
gtgctcgatgaggcccccatggcgtacaaatccgctgacgcgatcgctgcggcggtcgaa
ccgacggcgacgatcatcgatcgactcgatgtcgtccacaacctgaaggcgctcgactga
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