KEGG   Halocatena salina: MW046_04435
Entry
MW046_04435       CDS       T08090                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
haad  Halocatena salina
Brite
KEGG Orthology (KO) [BR:haad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:haad03016]
    MW046_04435
Enzymes [BR:haad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     MW046_04435
Transfer RNA biogenesis [BR:haad03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    MW046_04435
 Prokaryotic type
   tRNA splicing ligases
    MW046_04435
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: UPM43700
UniProt: A0A8U0A3E4
LinkDB
Position
883689..884981
AA seq 430 aa
MFDIEGEQTTARVFLEEDQLGQAAHEQLQTLVDHAAFRNPVCVMSDAHWGKGSVIGFTME
LGERVVPNTIGVDIGCGLYAVNVGSELSVSGEELDRAVRSRIPMGSAVRSDTDYDMAAFP
WQKANDVLERFEESYGRDLGFDGYDRSYFISLCRRVGMDEGRAVDSIGTLGGGNHFIEFA
RSDRSGDVWVVIHSGSRGLGYEIATHWQERATEHMDTRGIDVEAEIQRIREEYEGEEIGR
RIDSFQERLTDRDRNETLDYLEGTEADGYFVDMIFAQQYAAENRREMARQIRSVLEATLE
DEIESVHNYIDFRDLVIRKGATRAYEDERFLVPFNMRDGTLICKGKSNPDWNCSAPHGAG
RVMSRRQATREVELDAFQETMTDVFSRSVNGDTLDEAPQAYKDAELIERSIEPTARITDR
LDVFHNIKAS
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgttcgatatcgagggcgagcagacgactgcccgcgtctttctcgaagaagaccaactc
gggcaggccgcccacgaacagctccagacgctggtggaccacgccgcctttcggaatccc
gtgtgtgtgatgagcgatgcccactgggggaaagggagcgtcatcggcttcacgatggaa
ttgggtgaacgggtggttccgaacaccatcggtgtcgacatcgggtgtgggctgtacgcc
gtcaacgttgggtccgagctgtcggtgtcgggtgaggaattggatcgtgcagtccgttcc
cggattccgatgggatcggcggtccgttccgacacagactacgacatggcggcgtttcca
tggcagaaggcgaacgacgttctcgaacggttcgaagagagctacgggcgtgacctaggg
ttcgatgggtacgatcgatcgtatttcatctccttgtgtcgtcgcgttgggatggatgag
gggcgtgcagtcgacagcatcggaacgctcggcggcggcaaccatttcatcgagttcgcc
cggagcgatcggagcggcgacgtgtgggtcgtcatccacagcgggagccggggattgggg
tatgagatcgcaacccactggcaagaacgggcgaccgagcacatggacacccgtggtatc
gacgtggaggcggagatccagcgcatccgcgaggagtatgagggcgaggagatcggccgt
cgcatcgattcgttccaggaacggttgaccgaccgcgaccggaacgaaacgctcgactac
ctcgaaggaacagaggccgacggctacttcgtcgatatgatcttcgcacagcagtacgct
gccgagaaccgccgggagatggcccggcagatccgttcggtcctcgaggcgacgctcgaa
gacgagatcgagtcggtccacaactacatcgactttcgggatctcgtgatcagaaaaggg
gcgacgcgagcctacgaggacgagcggtttctcgttccgttcaacatgcgcgacggcacc
ctgatctgtaaagggaaatcgaacccagactggaactgctccgctccgcacggggcgggg
cgggtgatgagccgacgacaggcaacccgagaggtggaactcgatgcgttccaggaaacg
atgaccgacgtgttttcgaggagcgtgaacggtgacacactcgatgaggctccacaggcg
tacaaagacgcagagctgatcgagcggtcgatcgagccgacggcacgaatcaccgaccga
ctcgacgtgttccacaacatcaaagcgtcgtag

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