Halocatena salina: MW046_11450
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Entry
MW046_11450 CDS
T08090
Name
(GenBank) GAF domain-containing protein
KO
K06930
HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
Organism
haad
Halocatena salina
Brite
KEGG Orthology (KO) [BR:
haad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
haad03000
]
MW046_11450
Transcription factors [BR:
haad03000
]
Prokaryotic type
Helix-turn-helix
Other families
MW046_11450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAT
GAF_2
HTH_10
PAS_4
GAF
GAF_3
PAS_9
PAS
Response_reg
PAS_8
Sigma70_r4
Diguanyl_cycl_sensor
HTH_20
HTH_11
Motif
Other DBs
NCBI-ProteinID:
UPM42565
UniProt:
A0A8U0A0F2
LinkDB
All DBs
Position
complement(2229478..2232324)
Genome browser
AA seq
948 aa
AA seq
DB search
MASSTTTLPTTDVVVVGTAEWMDDLAATLTAVTDASIRRLRTIEATRERSVATFDCVLTG
YELADGTGIDLLQAVETTTPIVVCTASGNEQIASKAMAAGAVDYIAVSDPSSLPVDELIE
RLSRAVRDAWRTETRQERSRQFEAVFQNTQTATWVLDPEGRLQRANRTALKMIDPDGSTL
IGERFWDLPWWSRMDRSQFPIEQLVRSVIDDRTTERLVTTIGDERIIELSALPVQAPENE
LAGIVVEGDDVTERASLYRELRSSEVLHRVTLNNMTDTVLVTDDDGAFTYICPNVHFIFG
YTAAEIRDFGTIDELLGEDLFDPDELEKSGVLKNIECTTTDKAGQEHTLLVNVRAVSIQD
GTRLYSCRDITKRKQREEALATLQETTRDFLYAETPQEIAHHIVDDVPSVLDVEASAVYQ
FDPDRNVLEPIAQSSPMERLNGPLPTVPADAETLPSYSFVEDDALFFEDVHDSPRLDNQA
TDVRSGAYIPLGDHGVFIAGSSDVGQFDAVTRELADLLAATAEAALDRIRRERRLREQER
ELQHRNTELTALNRVNEIIRDIDQALVQAETREEIEHAVCQRLTAEDRFAFAWIGIEDAA
TGTITPRAWAGVEQGYLDSLSFPIGESETEPSGRAEATQTVTRITNVADRFRQESWRKEA
LSRNFLSILSVPIAYDDFTYGVLTVYAETQNAFDETAQAVLAELGETIASAVSAIERKNA
LLTTSITRVRFMVDDPLFVLTRIARMAGCTLTYHGGVRQTTDGSYLFVAVEGASMDAVER
AATELVAIDDVHPINTDNTGGVLRIRLPDQFLALELADHGAILRRASVDADTTTLVIDIP
ETIDSRHITHLVTDTFRNVELRSKRTIDQSATQNVYSRFLDRVTDRQLEVLQTAYYSGFF
ESPRERTGEEIAETLGISPPAFYQHIRTVQRKLFTTVFDEQGLPSVPS
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctcgacgactaccctaccgacgacagacgtggtagtggttggaacagccgag
tggatggatgatctcgcggcgacgctcacggccgtcactgacgcgtcaattcggcgtctg
cggacgatcgaagcgacgagagaacgctccgttgccaccttcgactgtgtcctgaccgga
tatgaactcgccgacggaacgggaatcgacttgctccaagcagtggagacgaccacgccg
atcgtcgtatgcactgcttcggggaacgagcagatcgccagcaaggcgatggcggcaggt
gctgtcgactatatcgccgtctccgatccatcgtcccttccagtggatgagctcatcgag
cggctgtcacgggccgtacgcgatgcgtggcgaacggaaacgcggcaggagcgttcccgc
cagttcgaggcggtgtttcagaacacacaaacggcgacgtgggtgctcgatccggaggga
cggctacagcgagcaaacaggacggccctcaaaatgatcgatcccgatggatccaccctc
atcggagaacgattctgggatctcccctggtggtcgcggatggaccggtctcagttcccc
atcgagcagctcgttcgctcggtcatcgacgatcggacgaccgaacggctcgtcaccacc
attggcgatgaacggatcatcgaactctccgcgctcccagtgcaagccccggagaacgag
cttgctggtatcgtcgtcgagggagacgacgtcaccgaacgagcctcgctctaccgggag
cttcgttcctccgaggtgcttcaccgagtaacgctcaacaatatgaccgacacggtgttg
gtgactgacgacgacggagcgttcacgtacatctgtccgaacgtccatttcatcttcggc
tacaccgcagcggagatccgtgatttcggcacgatcgatgaactcctcggcgaagacctg
ttcgatcccgacgaactcgaaaaatcgggcgtcttgaaaaacatcgagtgtacgaccacg
gacaaagccggacaggaacacaccctgttggtcaacgttcgggccgtttcgatccaagac
ggcactcggttgtacagctgccgggatatcacgaagcgaaaacaacgtgaggaggcatta
gcgaccctccaagagacgacgcgggactttctgtacgccgagacgccccaagagatcgct
catcacatcgtcgatgacgttcccagcgtgctcgatgtcgaagcgagcgctgtttatcag
ttcgatcccgaccggaacgtgctcgaaccgatcgcccagtcgtccccgatggaacggctg
aacggcccgcttccgacggtgccggccgacgctgaaacgctccccagctacagcttcgtc
gaggacgacgcgctctttttcgaggacgtacacgactcgcctcgcctcgacaatcaagcg
accgacgttcggagtggagcatacattccgctcggcgatcacggcgtctttatcgctggc
tcgtccgatgtcggacagttcgacgccgtcactcgtgaacttgccgacctactcgctgcc
acggctgaggccgccctcgaccgcatcagacgggaacggcgcttgcgcgagcaagagcgc
gagctacagcatcgaaacaccgaactcacggcactcaaccgggtcaacgagatcattcga
gacatcgatcaggcgctcgtccaagcggaaacgcgcgaagagatcgaacacgccgtctgt
cagcggctcacagctgaagacaggttcgcattcgcgtggatcggcatcgaggacgccgca
accggcacgataaccccgcgggcgtgggctggtgtggaacagggctatctcgacagtctc
tcgttcccgatcggtgagtcagaaaccgaaccatcgggccgggcggaggccacccagaca
gtgacacgaatcacgaacgtcgccgatcggtttcgacaggagtcgtggcgaaaagaggca
ttatcgcggaacttcctttcgatcctcagcgtcccgattgcatacgatgatttcacgtac
ggcgtgttgactgtgtatgcagaaacacagaacgccttcgatgaaaccgctcaagcggtg
ctcgcagaactcggtgaaacgatcgcttccgcggtgagcgccatcgaacggaaaaatgca
ctgctcaccacgtcgatcacacgggttcggttcatggtcgacgatccactgttcgtcctg
actcggatcgcacgaatggctggctgtacacttacgtatcacggcggtgtcagacagacg
acagacggtagctatctcttcgtcgctgtcgagggcgcgtcgatggacgccgtcgagcgg
gctgcaacggagctagtcgctatcgatgacgtccacccgatcaacacagacaacaccgga
ggcgtgctccggattcggcttcccgatcaatttcttgccttggaattggccgatcacggg
gccatcttacgacgagcgtcggtcgatgcggatacgacgacgctcgtgatcgacattccc
gagaccatcgacagccgccacattactcatctcgtgacggatacgttcagaaacgtggaa
cttcgatcgaagcggacgatcgatcaatccgcgacgcagaacgtctattcacgatttctc
gaccgggttaccgacagacagctcgaagtgttacaaaccgcatactacagcggcttcttc
gaatctccccgcgaacgaacgggcgaagagatcgcggaaacgcttggcatctcgccacca
gcgttctaccagcacattcgaaccgtccaacggaagctgttcacgacggtgttcgacgag
caagggctgccgtccgtcccttcgtga
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