Halomonas sp. A3H3: HALA3H3_210100
Help
Entry
HALA3H3_210100 CDS
T10226
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
haah Halomonas sp. A3H3
Pathway
haah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALA3H3_210100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haah03021
]
HALA3H3_210100 (rho)
03019 Messenger RNA biogenesis [BR:
haah03019
]
HALA3H3_210100 (rho)
Transcription machinery [BR:
haah03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HALA3H3_210100 (rho)
Messenger RNA biogenesis [BR:
haah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HALA3H3_210100 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
CDG51567
LinkDB
All DBs
Position
hala3h3:complement(1097902..1099161)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLDIAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYISPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAERRVFPAINI
RRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcactgaactcaagcaaaaaaccgttcccgagctcctcgatatcgcccgtgaa
atgggtattgataacttggcccgttcgcgcaagcaggacatcattttcgccatcctcaag
aaacacgccaaaagtggcgaggatatctatggcgacggtgtgctggaaattcttcaggat
ggcttcggcttcctgcgtagcgctgacagctcctatctcgccggtcccgacgatatctac
atatcgccttcgcagatccgccgtttcaatctgcgcaagggtgactccatttccggcaaa
atccgtccgccgaaggagggtgaacgctacttcgccctgctgaaggtcagtcaaatcaac
tttgaccgtccggaaaatgccaagcacaagatcctgtttgagaacttaacgccgctgttc
ccagacgatcgcatgcgtatggagatcggtaacggctccacggaagaccttaccgcgcgg
atcatcgatctaaccgcgccgatcggtaaaggccaacgtggtttgctggtatcgccgccc
aaggcgggtaaaacgctgatgttgcaaaacatcgcgacctccatcacgcgcaacaaccca
gagtgtcatctgatcgtactgctgatcgatgagcgccctgaggaagtcaccgaaatgtcg
cgcaccgtgcgtggcgaagtcgtggcgtcaacctttgatgagccgccagcgcgtcacgtg
caagtcgctgaaatggttatcgagaaagccaagcgtttggttgagcacaagaaagacgtg
gtcattctgctcgactcgattactcgcttggcgcgtgcttacaacaccgtggtgcccagc
tctggcaaagtgctcaccggtggtgtcgatgcccacgcccttgagaagccaaaacgcttc
tttggtgcggcgcgtaatatcgaagagggtggcagcctgacgattatcgccacggcgctg
gtcgatactggctccaaaatggacgaagtcatcttcgaagagttcaagggtaccggtaac
atggaagcccacctggatcgcaagctggctgagcgtcgtgtattcccggcgatcaatatc
cgtcggagtggcacccgtcgtgaagacctgctggcttctgaggatgaaatgcagcgcatg
tggattttgcgcaagctgctcaatccgatggaagacaccgccgccactgaattcctgatt
gaccgtctgaaagataccaagaccaatcttgagttctttgaagcgatgaagcgccgctag
DBGET
integrated database retrieval system
