Halomonas sp. A3H3: HALA3H3_210104
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Entry
HALA3H3_210104 CDS
T10226
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
haah Halomonas sp. A3H3
Pathway
haah03030
DNA replication
haah03430
Mismatch repair
haah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALA3H3_210104 (dnaE)
03430 Mismatch repair
HALA3H3_210104 (dnaE)
03440 Homologous recombination
HALA3H3_210104 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haah03032
]
HALA3H3_210104 (dnaE)
03400 DNA repair and recombination proteins [BR:
haah03400
]
HALA3H3_210104 (dnaE)
Enzymes [BR:
haah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HALA3H3_210104 (dnaE)
DNA replication proteins [BR:
haah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HALA3H3_210104 (dnaE)
DNA repair and recombination proteins [BR:
haah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HALA3H3_210104 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
OB_POT1A
Herpes_IR6
Motif
Other DBs
NCBI-ProteinID:
CDG51571
LinkDB
All DBs
Position
hala3h3:complement(1103734..1107246)
Genome browser
AA seq
1170 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERAMPALALTDETNLFGLVKFYKAAQGAG
LKPIIGSDLWLHNPHDESHPYRLTLLAMNDIGYRNLTELISKGWTHGQRQGRAILDKQWV
LEQSEGLIALSGAREGEIGRHLLSDHEQDARVLLEEWQAAFPERFYLELIRTGRPLEEAC
VHASVKLAIETGTPVVATNDVRFLEREDYWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPDEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFGIPEGMTQDEFFRKVSHDGL
TERLDFLFPAERYPRDSEEYQAIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
RVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIGNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRSVNGQDPLNIDSIPLDDA
PTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHELLKPVLAPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGK
KKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPNVNVGGYKFTVDTDARVVYG
LGAIRGVGEGPIGAIVEAREADGPFKDIFDFCRRIDPKRMNKRTLEALIRSGALDTLGPN
RAVLFAAMEDALKAASQNHANQNLGMLDMFGDAFAAADESDGDSNVYAEYINAREWTDRE
RLSGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSRDPQRVAGLVVGVRTMKSKRG
DTMAFITLDDRTGRIEASLFGELFEQLRGQIEADQVLIVEGEVSSDEYSGGLRLRGKDVT
PMVTARIRYGQAVELALDAGQINGRLIETLRDSLTPYRDQEGLPVRLQYRHPAAVAWLEL
ADEWKVAPSDDLLLALQDVQGQTGVQLRYR
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgttcgttcatttacgtttgcacagtgaatattccctggtcgatggctta
gtgaagctaaagtcgctggttagcaccacggctgaacgggcgatgccagcgctggccttg
accgatgaaaccaacctgttcggcctggtgaagttctacaaagccgcccagggggcgggg
ttgaagccgattattggcagcgacttatggctccataatccccatgacgagtcccaccct
taccggctaacgctgctggcgatgaacgatattggctatcgcaacctgaccgagttgatc
tcgaaaggttggacgcatggtcaacggcaggggcgcgccattctcgataaacagtgggtg
ctggagcagagcgaaggcttgattgcgctttccggcgcgcgggagggtgagattggccgc
cacctgctatctgatcacgaacaggatgcgcgggtgctgctcgaagagtggcaggcggcc
tttcccgagcgcttttatctagagttgattcgcaccgggcgcccgctggaagaggcctgc
gttcacgccagcgtcaagctggccattgaaacaggcacgccagtggtggcgaccaatgac
gtgcgctttcttgagcgcgaagattattgggcccacgagacccgcgtcgccatcggtgaa
ggtaaagcgctggacgacccacgccgcgaacgccgctacactgaagagcagtacttaaaa
agccccgacgagatggcggcgctgtttgccgatatccccgaagcgctggaaaacagcgtg
atgatcgccgagcgctgcagcgtggatgtgcgcctgggcgagattttcctgcccgagttc
ggcattcccgaagggatgacccaggatgagttcttccgcaaagtatcccatgacggttta
accgagcggttggattttttgtttcccgctgaacgctacccccgcgacagcgaagagtac
caggcgatcgaccagcgctaccgcgaccggctggagttcgagctcaacgttattatccag
atggggttccctggctacttcctgatcgtgatggacttcatccagtgggccaaggacaac
cgcgtaccggtaggcccggggcgtggttccggtgctggttcgctagtggcctacgcgcaa
aagatcactgacttagacccgattggctacgacctgctgttcgagcgctttcttaacccc
gaacgtgtctccatgcccgactttgacgtcgacttctgcatggaaaaacgcgacaaggtg
atcgagtacgtagccgagcgctacgggcgcaatgcggtctcccagattgttacttttggc
accatggcggcgaaggccgtggtgcgcgacgtcgcccgtgcccaaggccgtccgtactcg
ctgggggataagctctccaagctgattccctttgaagtaggcatgaccctggccaaggcg
attgagcaggaacccgcgctcaaagagtttatcggcaacgatgaagaggccgaagagatc
tgggaaatggcgctcaagcttgagggcaccacccggggcaccggcaagcacgccggtggc
gtggtcatcgcccccaccaaactgaccgatttctcaccgctgctctgcgatgaagatggc
tccggcttggtggtacagttcgataaaaacgatattgaagaggcggggctggtcaagttc
gacttcctgggcctgcggacgctgacgattatcgactgggcactagagatggtcgacaag
gtgcgcagcgttaacggccaggatccgctcaacatcgacagcatcccgctggacgacgcg
ccaaccttcgagatgctcaagcgcgctgaaaccacggcggtcttccagctcgaatcccgc
ggcatgaaggagctgatcaagcgcctgctgcctgactccctggacgatatgatcgccctg
gtggcactgttccgccccggcccactgcagtcgggcatggtcgacgactttatcaaccgt
aagcacggccgggccgaagtctcttatccacacccggattaccagcacgagctgttgaaa
cctgtcttggcgcccacctacggcatcatcctctaccaagagcaggtcatgcagatcgct
caggtaatggcaggctacagcctcggccaggccgatatgctgcgccgtgccatgggtaag
aaaaagcccgaagagatggccaagcagcgtgacggctttatggaggggtgtgccgccaac
ggtatcgataaagacctggccggtaacatctttgacctggtagagaaattcgccggttac
ggctttaacaagtctcactcggctgcctacgcgctggtgtcttaccaaactgcgtggctg
aaagcccactatccggggccctttatggccgccgttatgtccacggaaatggacaacctg
gataaagtggtgccgctgattgaggagtgtcggaacctcaagctcaccgtaacgccgccg
aacgtcaacgtcggtggttacaagttcaccgtcgataccgatgcgcgtgtggtctatggg
ctaggcgcaattcgcggcgtgggcgaagggcccattggcgccattgtcgaagcccgcgag
gcagatggcccctttaaagatatcttcgatttctgccgccgcattgatcccaagcggatg
aataagcgcaccctggaggcgctgattcgctccggcgcgctggataccctaggccccaat
cgtgcggtgctgttcgcagcgatggaggacgcgctaaaagccgcttcccaaaaccacgcc
aatcagaatctgggcatgctggatatgtttggtgatgcgttcgccgcggccgatgaaagt
gacggtgacagcaacgtttacgccgaatacatcaacgcccgtgagtggaccgatcgcgaa
cggctctcaggggagaaagataccctggggctttacctgacagggcacccgatcgacgag
tacgagcgggagctaaaacgttttgtctccacgcggatcagcgatttaaaaccttctcgc
gacccccagcgcgttgctgggctagtggtcggcgtgcgcaccatgaagtcaaagcgtggt
gataccatggcgtttatcaccctggatgaccgcaccgggcgtattgaagcttcgctgttt
ggggagctattcgagcaactacgcggtcagattgaggctgatcaggtactcatcgttgag
ggcgaagtctccagcgacgaatactctggtggcctgcgcctacgcggtaaagacgttaca
ccaatggtgacggcgcgcattcgctacggccaagccgtggaactggcattggacgcgggg
cagatcaatggccgcttaattgaaaccctgcgcgacagcctgacgccgtatcgcgatcaa
gaggggttgccggtgcgcctgcagtaccgccacccagcggcagtggcttggctggaactt
gccgatgagtggaaagtcgcaccgagcgacgacttactgctggcgctgcaggatgtccag
ggtcagacaggcgtacagctacgctatcgatag
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