Halomonas sp. A3H3: HALA3H3_30316
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Entry
HALA3H3_30316 CDS
T10226
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A homolog
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haah Halomonas sp. A3H3
Pathway
haah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALA3H3_30316 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haah03019
]
HALA3H3_30316 (deaD)
03009 Ribosome biogenesis [BR:
haah03009
]
HALA3H3_30316 (deaD)
Enzymes [BR:
haah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HALA3H3_30316 (deaD)
Messenger RNA biogenesis [BR:
haah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HALA3H3_30316 (deaD)
Ribosome biogenesis [BR:
haah03009
]
Prokaryotic type
rRNA helicases
HALA3H3_30316 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CDG52099
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All DBs
Position
hala3h3:complement(383556..385271)
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AA seq
571 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVESQGYLVPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESGTTTGENIEQRIVRVDGGAKLEALS
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFYQRVIASLTKGAEEQRALIERLIEEGHDPI
ELTCAFAAMARADEAPIGRLQAPRKEKPSRDGASGGKPGARRERTGAPTEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILTKMARARVAGRP
LEISEDSAPAERAPRRRRDEGDAPVRRRERA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatctggctcttttgcctgccgtt
ctgtctgctgttgaatcacagggctacctcgttccctcgccgattcaggcacaaactatt
cctgcgttgcttgaaggccgcgatatgctgggccaggcccagacgggtaccggcaaaacc
gcagcgtttgcattaccgttactgtcacgtttagagctgactcgccgtgagcctcaagtg
ttggttatggcgccaacccgcgaattggctcagcaagtagctgcctcgtttagtaaatat
ggccaaaacctgaaaggtctcgaagttgcgaccctatgtggtggccaagagtaccgtgaa
cagctgggcgcccttaagcgtggcgcgcaagtggttgtcggtacccccggccggattatc
gaccacctggatcgcggtagcctgaagcttgatggcctctccgccctagtgctggacgaa
gctgatgaaatgttgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
ccgaaagatgctcagcgtgtgttcttctcagcgacactgcccactgaaatcgagcgcatc
gttaaccgttacttggttaacccagtgaaagtcgcgattgagtcgggcaccacgaccggc
gaaaacatcgaacagcgcattgtgcgtgttgatggtggcgctaagcttgaagctctttcg
cgtattcttgaagtcgagccggtcgatggggccatcgtctttgtacgtacccgtgccgct
tgtaccacgctcgttgagcagttgactgctcgtggcgttaacgctgctggcctgtccggt
gatctcgatcagagcctgcgtgagcgtactattacgcgcttgaagcgtggcaaagtcgac
gtactgatcgctaccgatgtagctgcccgtggtcttgacgtgtcgcgtatcactcacgtt
atcaactacgatctgcctcaagatgcagaggcttatacgcaccgtattggccgtaccggt
cgtgcgggccgtagcggtatcgcgattacctttgctggcttccgtgaaggccgcaaagtg
ggctggatggagcaggcaaccggtcagaaaatgaccgaaatgccgctacctgatgaagcc
gctattcgtgcccatcgcgatgacgtcttctatcagcgtgttatcgcctccttaacgaag
ggcgccgaagagcagcgtgcgctgattgagcgtctgatcgaagaaggccatgacccgatc
gagctgacttgtgcgtttgccgctatggcgcgtgctgacgaagcgccgatcggtcgcctt
caggcgccgcgcaaagagaagccctcgcgtgatggagcgtctggcggtaagccgggagca
cgccgcgaacgcactggtgcaccaactgaaggtatgacgcgctaccgcgtatcggttggt
cataaagatggcgtcaagcctggccaactagttggtgccctcgccaacgaaggcggcatt
gaaggcgcgcgtatcggtcgtatcgatattcgcaacgctttctctgtggtcgaactgccg
agcggcttgccctcgacgattctgaccaagatggcccgtgcccgtgtggccggtcgtccg
ttggaaatcagcgaagacagcgcaccggcagagcgtgcaccgcgccgccgtcgcgacgaa
ggcgatgcgccggttcgtcgtcgcgaacgcgcctaa
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