Halomonas sp. A3H3: HALA3H3_340086
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Entry
HALA3H3_340086 CDS
T10226
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
haah Halomonas sp. A3H3
Brite
Transcription machinery [BR:
haah03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HALA3H3_340086 (rapA)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CDG52392
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Position
hala3h3:1609506..1612451
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AA seq
981 aa
AA seq
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MSDFSPGQRWISDGEAELGLGTVLNCDARSVTILFSASQETRTYNTRQAPLTRVMFGSGD
RVLSADGWQIVVDDSKESNGLITYIGEDKEGNLRELPEAKLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHYQRIEQHSALGFSGPRIDLIPHQLYIANEVANRHAPRVLLADEVGL
GKTIEAGLILHRLLLNGRVERALILVPDSLTHQWLVELLRRFSLNVSLLDETLSQAHGSA
NPFESAQLVLASQGWLFANPQRQEQALASQFDLLIVDEAHHLDWSEEGSGPGYRCVEQLS
AVIPGLLLLTATPEQMGIKSHFARLRLLDSERYHDLERFKAEESHYTEVARAIDALEALP
DDPSARTDVSAVADDRDSQALLAILCNPEASKAQQDTARDQLSEALLDRHGTGRVMFRNS
RRHVGGFPERRLNLAPLALPSAYRRVVRRLERDDDYLDELLIETGMDHPDVLIYPDAAYR
ELSNDPLNGEDWWHIDPRVNWLLEKLSDDSESGFANEKVLVIAHHRETAEGLAEGLRVLG
GYHAPVFHEDLSLIERDRAAAAFADEDEGVQVLVCSEIGSEGRNFQFCRHLVMFDMPQHP
DQLEQRIGRLDRIGQRHAIELHIPTFEGSPGERLLRWYHEGMDAFSAPHGVGNELFDAFG
DALADALLDDEALDEIIAETRTMFSAKLAEHDAGRNRLLELNACRPARAQQVIDAVRELD
DDAALPRYLERALDIFGVDSQEIGKGLMHLQPSQHMLDGLPGLVKGEEGFTATYSRSQAL
ARDDVQRLSWEHPLLREMMGRVLDGTMGNSALALLRHDAIPSGRLMAELVFRTHCPAPKK
LHLNRFLPPTAVRLLLDESGANLTSKISFTGLGKNLQKVNKSLARDLIKSRHDQLRELLT
QGEGEAERQLPSIVENAEARMRTQLDAEIARLTALAEHNPAVRSAEIDALKDERKALSEA
IENTRLRLDSVRVIITVDADR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttttctcccggccaacgctggattagcgacggcgaagccgagcttgggctc
ggtaccgtgcttaactgcgacgcccgtagcgttaccattttgttcagtgccagtcaggaa
acccgtacctataacacccgccaagccccgctgacccgcgttatgttcggcagcggcgac
cgcgtactctctgctgacggctggcagatcgttgtcgatgacagcaaagagtccaacggc
ctgatcacctatatcggtgaagacaaggaaggcaatctgcgcgagctgcccgaggccaaa
ctcgccgataccatgcagttcgaccaggctcgcgaccgcctgctgaccggccaggtcgat
cgcaacgactggtttgatttgcgctttcgtaccctgcaccactatcaacgtatcgagcag
cacagcgcgctaggcttttccgggccgcgcatcgatctgataccccatcagctctacatt
gccaatgaagtggccaaccgccatgcaccccgggtactgctggcggatgaagtgggcctg
ggtaaaaccattgaagctggcctgattctgcaccgcctgctgctcaatggccgtgttgag
cgggcgctgattctggtacccgacagcctcactcaccagtggctggtcgagctgctgcga
cgcttttcgctcaacgtctcgctactggatgaaaccctgagccaggcccacggcagcgcc
aacccctttgagagcgcccagctggtgctagcgagccagggctggctatttgccaaccct
cagcgtcaagagcaggcactggccagccagttcgacctgctgattgttgacgaagcgcac
cacctcgactggagtgaagaaggcagcggccccggctatcggtgcgtcgaacagctttcg
gcggtgattcccggcctgctgctgctcaccgcgacccccgaacagatgggtatcaagagc
cactttgcccgcctgcggttgctggatagcgagcgctaccacgatcttgagcgcttcaaa
gccgaagagagccactacaccgaagtggcccgcgccatcgacgccttggaggcactgcct
gacgaccctagcgcccgtaccgacgtctctgcggtagccgatgaccgcgacagccaggcg
ctgctggccatcctgtgcaacccggaggccagcaaagcgcagcaggacaccgctcgcgac
caactgagcgaagcgctgctggatcgccacggtaccggtcgagtgatgttccgcaacagc
cgccgtcacgtaggaggcttcccggagcggcgcttaaacctggcaccgttagcgctgcct
tcggcctaccgtcgcgtggtgcgccgcttagagcgcgacgacgactacctcgacgagctg
ttgatcgagaccggcatggatcaccccgacgtgctgatctaccccgacgcggcctaccgc
gagctcagcaatgatcccctcaatggcgaagactggtggcacatcgacccgcgggttaac
tggctactggagaagcttagcgacgacagtgagagcggcttcgccaacgaaaaagtcctg
gtcattgcccaccaccgggaaaccgctgaaggccttgctgaagggctacgggtgctgggc
ggctaccacgctccggtgttccacgaagacctctccctgatcgagcgtgaccgcgcggcg
gcggcgtttgccgatgaggatgagggcgtacaggtgctggtctgctcggaaattggctca
gaggggcgcaacttccagttctgccgccacctggtgatgttcgatatgcctcagcaccca
gatcagctggagcagcgcatcggccgcttggatcgcatcggtcagcgccacgctattgag
ctgcatattcctacttttgagggcagccccggcgagcgcctgctgcgctggtaccacgaa
ggtatggatgcgttcagtgccccccatggggtcggcaacgagctgtttgatgcctttggt
gacgccctggctgatgccttgctggatgatgaggcacttgacgagatcatcgccgaaacc
cgcacgatgtttagcgccaagctggcggagcacgatgcgggccgcaaccgactgctggag
ctcaacgcctgccgccccgcccgcgctcagcaggtgatcgacgcggtgcgcgagcttgac
gatgacgccgccctgccgcgctatcttgagcgagcgttggatattttcggcgtggatagc
caggagatcggcaagggcttaatgcacctgcagcccagccaacatatgctggatggcctg
ccgggcctggttaaaggtgaagagggctttaccgccacctacagccgctcccaggcgctg
gcccgtgacgatgtgcagcggctctcctgggaacacccactgctgcgtgaaatgatgggt
cgggtgctggatggcaccatgggcaactcggcgctggctctgctgcgccacgacgccatt
cccagcggccgcttgatggccgagctggtgtttcgcactcactgcccggcacccaagaag
ctgcaccttaaccgcttcctgccacccaccgcggtgcgtttgctgctggatgaatcgggc
gccaacctgaccagcaagatctccttcaccggcttgggcaaaaacctgcagaaggtcaac
aagtcgctggcgcgggatttgatcaagagccgtcacgaccagctgcgtgaactgctaacc
cagggtgagggcgaagccgagcgccagttgcccagcatcgtcgagaacgccgaagcgcgt
atgcgcactcagttggacgccgagattgcccgcttaacggcacttgccgagcacaacccg
gcggtgcgcagtgcggaaatcgacgcgctaaaagatgagcgcaaggcacttagcgaagcc
attgaaaacactcgcctgcggctggactcagtacgggtgattatcaccgttgatgccgac
cgctaa
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