Halomonas sp. A3H3: HALA3H3_680021
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Entry
HALA3H3_680021 CDS
T10226
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
haah Halomonas sp. A3H3
Pathway
haah02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HALA3H3_680021 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haah03021
]
HALA3H3_680021 (rpoD)
Transcription machinery [BR:
haah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HALA3H3_680021 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CDG54037
LinkDB
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Position
hala3h3:3337219..3339069
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AA seq
616 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIGMINDMGISVAEE
APDEDTLMMSDQSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGTREVMSSLAYLPGAVASILDAYDATQDEEAPGRLSDLFSGFIDPDEGIPGVA
EAEVPEPEPEAEIDDDIESDGDDEDEDSTASEGGPDPEEARARFEQIREQNALVEEAFAK
HGRGSAELKAEQARLAVLFSPIKLVPKHFERLVGQVRISVEQVRAQEKAVMQLCVKKAKV
PRKTFIKSFPGNESSKTWLDEFQAAQSKYADRLEPLRADIARAQRKIAFEEDMVQLSVAD
LKEVNRKLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGRE
PTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPIDMATG
EGLIEATRNVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEPLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaatgcgcagcagcagtcgcgtctgaaggagttgatcgctcgaggcaaggaa
cagggttacctgacctatgccgaggtcaacgaccatctacctgaggatatcgccgacccg
gatcaagtggaagacatcattggcatgatcaacgacatgggtataagtgtcgctgaagaa
gcgccagatgaagacactttgatgatgtcggatcaatccacggacgagtccgctgcggaa
gaggccgtagcggcccttgccgccgtggaaagcgatgtaggccgcaccactgaccccgta
cgcatgtatatgcgtgaaatgggcacggttgagcttttgacccgtgaaggcgaaatcgaa
atcgccaaacggatcgaagagggtacccgtgaagttatgtcgtctctggcctatttgccg
ggtgccgtcgcgtctattttggacgcctatgacgctacccaggatgaagaagcgccgggg
cgtctttcggatctgttttctggtttcatcgatcccgatgagggtatccccggcgttgcc
gaagcagaggtgcccgaaccggagcctgaagccgagattgacgacgacattgagagcgac
ggcgacgatgaggacgaggattctacggctagcgagggcggcccggatcctgaagaagcg
cgtgcgcgtttcgagcagattcgcgagcagaacgccttggtggaagaggcgtttgccaag
catggccgcggcagtgctgagttaaaggccgagcaagcccgcttggcggtgcttttctcg
cctatcaagctggtgcctaagcacttcgagcgcttggtcggtcaggtgcgtatcagtgtt
gagcaggtgcgtgcccaagagaaagcggtcatgcagctgtgcgtgaaaaaagccaaggtg
ccgcgtaagacgtttatcaagtcgtttcctggtaatgagtcgagcaaaacatggctggat
gaattccaggcagcgcagagcaagtacgcagaccgccttgagccgctgcgcgccgatatt
gctcgtgctcagcgcaagatcgccttcgaagaggatatggtgcagctctcggttgccgac
cttaaagaggtgaatcgcaagctctcgattggtgaggcgaaagctcgccgtgccaagaaa
gagatggttgaggctaacctgcgcttggtgatttcgatcgccaagaagtacaccaaccgt
ggtttgcagttcttggatctcatccaggaaggcaacatcggcttgatgaaagcggtcgat
aagttcgaataccgtcgtggttataagttctcgacttacgccacctggtggattcgtcag
gcaattacccgctcgattgccgaccaggcgcgcaccatccgtattccggtgcatatgatt
gagacgatcaacaagctcaatcgcgtatcgcgccagatgttgcaggaaatgggccgtgag
ccaacgccggaagaactcggcgagcgtttggaaatgccggaagataaagtacgcaaagtg
ctcaaaatcgccaaagagccgatctccatggagacgccgattggtgacgacgatgattca
cacctgggtgactttatcgaagacggcaccatgctgctgcccattgacatggctaccggt
gaaggtcttatcgaagcaacgcgcaacgtgttaggcggcttgaccgcccgcgaagcgaag
gtactgcgcatgcgtttcggtatcgatatgaacaccgaccataccctggaagaggtgggc
aagcagtttgacgtaacccgtgagcgaattcgtcagattgaagccaaagcgctgcgtaag
ctgcgtcaccccagccgctctgagccgctgcgttcgttcctcgacgagtga
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