Halomonas sp. A3H3: HALA3H3_740009
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Entry
HALA3H3_740009 CDS
T10226
Name
(GenBank) Exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
haah Halomonas sp. A3H3
Pathway
haah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HALA3H3_740009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haah03400
]
HALA3H3_740009
Enzymes [BR:
haah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HALA3H3_740009
DNA repair and recombination proteins [BR:
haah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HALA3H3_740009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CDG54365
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All DBs
Position
hala3h3:complement(3666277..3670140)
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AA seq
1287 aa
AA seq
DB search
MPSITSLDPLSLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGHSVDDDTAFIRPLTPPE
ILVVTFTNAATQELRERIRNRLVEAAEVFRAEDTDQAKGAGHSEGLLPGMAKVAPTDGFT
APSRRPAAERTADPLLLELRDQYDPATWPACSRRLALAAEWMDEAAVSTIHSWCYRMLRE
HAFDSGSLFSLNLENDQRELEQEVVRDYWRSFYYPLDSDALGIVTHYWKSPDKLHEPIRK
LLPESEALGDDKPEPSETLAASQAERSALLEELKEPWESWVDELRQLFDDGQKAKAFNAS
KMRKDHRGKWLDKIQQWAESDLVSPDIDKKAAAWDRLTPEGITEIWKGQPPSHPAFEAFA
KLPQALNVLPEPRNDLLIHAVQWCRARLEREQERRAEMGPNDLLTHLDRALKGPNKEALA
AQIQRQFPVALIDEFQDTDPIQYRIFNAVYDVATPRRDSAILLIGDPKQAIYAFRGADIF
TYLQARQDTDGRHVTLGTNFRSSHAMVAAVNHCFSYADQHDAGAFLFRADGGDNPLPFNP
VNAKGTKETLVLNGKPLAAMTLWPLESDEPLSKTAYQTEMAERCASHMAALLEAGRQQQA
GFAKATDDSDDNGLTPLAPSDMAVLVNGLQEARAIRLALASRGIKSVYLSDHDKVFSSPI
APQLAIWLRACAEPQANSRQAEAKLRAALATSVLGLSLEELDHLNQSELAWEARVEQFSD
YHRLWQRQGVLPLVRRLMVDFDIAARLLGEFAEGERLLTDLLHLGEMLQHASQELDGEHA
LIRFLAEAIADPDSHGDSHKLRLESDADLVKVVTIHKSKGLEYPLVFLPFIANHRPVSDT
DLPLRWHDSDGTLQLSLSADEATLATADRERLGEDLRKLYVALTRARHATWLGLAPLKGS
ENSAIGHLINGGKAIAPSAFTQAIGELVKGSDIALSAAPEPTALRFTPAPEQQALGHART
PLRPAREQWWIASYSALRTSGAVSGSSTIPLTTPAPEPTTPQEATTLEVLDEPHDNATNT
EAFHLHRFPRGPGPGTFLHGLLEWAGQLGFNTALEDPAAREDMLRRRVQLRGWQAWHDTL
AGWLEELLATPLPLPLSLSLAPSQSSEGSQVALCELESYQVELEFWFAAHQVQTRKLDEL
VSDHLLPGVSRPVLDADTLNGMLKGFIDLAFEHEGRFYVLDWKSNYLGSDDSAYTADALR
VAMLEKRYDLQAALYMLALHRLLKARLPDYDPYQHLGGSMTVFLRGSRTTARGVHAVPAP
VALIEALDALFAGSSTASAASNQEALA
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgccttctatcacatctcttgaccccctgagcctcccgcttcacggcagccgcctgata
gaggccagcgctggcaccggcaaaaccttcaccatcgccctgctttacgtgcggttggta
ctcggcggccacagcgttgacgacgacacagcgtttatccgcccgctcacgccaccggaa
atcctggtcgtcaccttcaccaacgctgccacccaagagctacgcgaacgcatccgcaac
cggctggtagaagcagcagaagtatttcgagctgaggatacagaccaagcgaagggagca
ggccatagcgagggtcttttgccagggatggcaaaagtagcccccacggatgggttcacg
gcgccctcgcgtcggcctgctgccgagcgaactgctgatccgttgctcctagaactccgc
gaccaatacgaccctgccacctggcccgcctgttcgcggcgcctggcgctggccgccgaa
tggatggacgaagctgcggtttccaccatccacagctggtgctaccgcatgctgcgcgaa
cacgccttcgacagcggcagcctgttctccctcaacctggaaaacgaccagcgcgaactg
gaacaggaagtggtgcgtgactactggcgcagcttctactacccgctggacagcgacgcc
ctcggtattgtcacccactactggaaatcaccggacaaactgcacgaaccgatacgtaag
cttctaccagaaagtgaagcactgggcgatgacaagcctgagcccagcgagaccctggcc
gccagccaagccgaacgcagcgcgcttcttgaagaacttaaagagccatgggaatcatgg
gtagatgagttgcgccagctctttgatgatgggcaaaaagcaaaagcatttaatgctagt
aaaatgcggaaagatcaccgcggtaaatggctggataaaatacagcaatgggccgaaagt
gatcttgtcagccccgacattgacaagaaagctgctgcatgggatcgactaacgccagaa
ggaattacagaaatttggaaggggcagccacctagtcatccagcctttgaggccttcgct
aaactaccgcaagcgctgaatgtcctgcccgagccgcgcaacgacctgctgattcacgcc
gtgcagtggtgccgcgcccgcctggagcgcgaacaggaacgccgcgccgagatgggcccc
aacgacctgctcacccatctggatcgcgccctgaaaggccccaacaaagaggccctggcc
gcgcagatccaacgccaattccccgtggcactgatcgacgagttccaagataccgacccg
attcagtaccgcatttttaacgccgtgtatgacgtcgcaacgccccgccgcgatagcgcc
attctgctgattggcgaccccaaacaagcgatctacgcctttcgcggcgcggatatcttc
acctacttacaggcacgccaagacaccgatggccgccacgtcacgctgggcaccaacttc
cgttccagccacgccatggtggcagcggtcaaccactgcttcagttacgccgaccagcat
gatgccggcgcctttctgttccgtgccgatggcggtgacaacccgttgccgttcaacccc
gtcaatgccaaaggcaccaaggaaacgctggtactcaacggcaaaccgctagcagcgatg
accctgtggccactggaaagcgacgagccgctctcaaaaaccgcctaccaaacagagatg
gccgagcgctgcgcctcgcacatggccgcacttctggaagcaggccgccaacagcaggcg
ggctttgctaaggcgactgacgacagcgacgataacggactcactccgctggccccctcg
gacatggccgtgctggtcaacggcctacaggaagcccgggcgattcgactggcgctggcc
agccggggcatcaagagcgtctacctttccgatcacgacaaggtgttcagttcccccatt
gccccgcagttggccatttggctgcgcgcctgcgccgagccccaggccaactcccgccag
gcggaagccaagctacgcgccgccctggcaacatcagtactagggctaagccttgaagaa
ctcgaccacctcaaccagagcgagctggcctgggaagcgcgggtcgagcagttcagcgac
taccatcgcctttggcagcgccagggcgtgctgccgctggtgcgccgattgatggtcgat
tttgatatcgccgcgcggctactgggcgagttcgccgagggtgagcgtttgctaaccgac
ctgctccacctgggcgaaatgctgcaacacgccagccaggaactggatggcgaacacgcg
ctgattcgctttctggcggaagccattgccgacccggatagccatggcgacagccacaag
ctgcgcctggagagcgacgctgatttggtcaaggtagtgaccattcacaaatccaagggg
ctggagtacccgctggtgttcctgccgtttatcgccaaccaccgcccggtcagcgacacc
gacctgccgctgcgctggcacgacagcgacggcacgctgcaactcagcctgagcgccgat
gaagccacgctggccaccgccgaccgcgaacgcctcggcgaagacctgcgcaagctctac
gtagcgctcacccgcgcccgccacgccacctggctagggctggcgccgctgaaaggtagc
gagaacagcgccatcggccacctgatcaacggtggcaaggccatcgcccccagcgcgttt
acccaggcgataggcgagttggtgaaaggcagcgatatcgcgctaagtgccgccccggaa
cccactgcgctgcgcttcacaccagcgccggagcagcaggcactgggccacgcccgcacg
cctctgcgccctgctcgggaacagtggtggatcgccagctactcagcgctgcgtacttct
ggggcggtctctggatctagcaccatcccgctgacaacgcccgcgccggaacccaccacg
ccacaggaagccaccactctggaagtgctggacgagccccacgacaacgccaccaacacc
gaggcgtttcatttacatagattcccgcgtgggcccggccccggcacctttctgcacggg
cttttagagtgggcggggcagctaggctttaacaccgccttagaagaccccgccgcccgg
gaagacatgctgcggcggcgcgtgcagctgcgtggctggcaggcgtggcacgacaccctg
gcgggctggctagaagaactgctcgccacgccgcttcccttgcctctatctctgtcactg
gccccgtcacaatccagcgagggcagccaggtggcgctatgtgaactcgaaagctatcag
gtggaactggagttctggtttgccgcgcaccaggtacaaacgcgcaagctggatgagctg
gtcagtgatcacttactgccaggggtatcacgccccgtattggatgccgacaccctcaac
ggcatgctcaaaggctttatcgacctcgcctttgaacatgaaggccgcttctatgtgctc
gactggaaatccaactacctgggcagcgacgacagcgcctataccgctgacgccctacgc
gttgccatgctcgaaaaacgctacgacctgcaagcggcgctgtatatgctcgcccttcac
cggctactgaaagcgcgcctgcccgactacgacccgtaccagcacctgggcggctcgatg
acggtatttctacgcggcagccgcaccaccgcccgcggggttcacgccgtgcccgcaccg
gtagcgctgatcgaagcgctggatgcactctttgctggctcatcaacagcgtcagcagca
agcaaccaggaggcactggcatga
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