Halomonas sp. A3H3: HALA3H3_790121
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Entry
HALA3H3_790121 CDS
T10226
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
haah Halomonas sp. A3H3
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haah03019
]
HALA3H3_790121 (hrpA)
Enzymes [BR:
haah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HALA3H3_790121 (hrpA)
Messenger RNA biogenesis [BR:
haah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HALA3H3_790121 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
AAA_25
nSTAND3
NACHT
T2SSE
PhoH
SLFN-g3_helicase
SRP54
Motif
Other DBs
NCBI-ProteinID:
CDG54642
LinkDB
All DBs
Position
hala3h3:3949552..3953598
Genome browser
AA seq
1348 aa
AA seq
DB search
MPKRMEADSIVTTDTSPAPTDSQRLASLKQAAGDVMLRDAERLERRLAGLNRRLRDSKPI
SRGLDEVQRELGRAQQQLSQRESQKVAFNYPPELPVVERREDIVNAIRDHQVVVVAGETG
SGKTTQLPKMCLELGRGRRGLIGHTQPRRLAARSVASRLAEELEVSLGEQVGYQVRFTDQ
SSPTTLVKLMTDGILLAETQHDPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDL
KVIITSATIDVERFAKHFGTTKTPAPVVEVTGRTYPVEVHYRPLVRDEDDEEDRTLQEGI
LHAVEEIEAVEREKGWLHGPRDVLVFLPGEREIRETADTLRRAELKGTEILPLYARLSNE
EQNRVFAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQ
ASANQRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEA
FPFVDPPDSRFVKDGFRLLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSL
RDVLIVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGN
QLRRWCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPPPRNEDESEEQARQTRRKTS
GKVHQALLSGLLSNLGTLVENREYLGARNRKFMIHPGSGLAKKSPKWIMAFEMVETSKLF
ARTVAKIDPQWIEPQAQHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRKVHYGPI
APQESRELFIRRALVEGEFHTKGAFFAHNRALIDEVEALEDRARRRDILVDEDTLYDFYD
QRIPAEIVNGKGFEHWRKQAEQQEPQLLHFDIDSLKARDAEDVTQAQYPDHLILAGVAYP
VSYHFDPEAEDDGVTLTVPAAMLPQVPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVP
IPDWVDAALETLVPDQRPLTEALGEFIRRRTSTRVHPDDWRLDVLEPHLIMNIRVVDHAG
ETLGQGRDLRALEQRFEAAASAGAQALAEQVSQEPAVAGLPKTPLPASRVTTQAGIRVEA
YPALVAESRIAKTSGLDASEFKVALFDHPAKADAAHQEGIARLAIAKLPEQVKAIKQLPG
VEKCALLFAKVGSKQALIDDLLLAVFTQVIAQHPLPRSEGEFSQRLNATQGQLVDEAKAL
LVRVEAALKGHLAVSKVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGAWLDEYPRYT
EAALIRLEKAARERGRDQMMMQDVQALEARFDARRESERRGRVEDPELVAFGWWLQELRV
SLFAQQLGTSMVVSVKRLEKRWQEITSV
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcgaatggaagccgactcaatcgtgaccaccgacacatccccagcccccacc
gatagtcaacgtcttgcgtcgctgaaacaggccgcgggcgatgtgatgctgcgcgatgca
gagcggctggagcgccggctggctggtttaaaccgtcgcctacgtgatagcaaaccgatt
agccgtggcttggacgaggtgcagcgcgagcttggtcgtgcccagcagcagctcagtcag
cgcgaaagccaaaaggtcgccttcaattacccgccagaattgccggtggtcgaacgccgg
gaggatattgtcaacgccatccgcgatcatcaggtcgtggtggtggcgggggagaccggc
tcaggcaaaaccacccagctgcctaaaatgtgtttggaactgggccgaggccgccgtggc
ttaattggccacacccaaccgcgtcgcttggctgcccgcagtgtcgccagtcgcctggcg
gaagagctggaagtctctctgggcgagcaggtgggctatcaggtgcgcttcaccgaccag
agcagcccgacgaccctggtcaaactgatgaccgacgggattttgctggccgagacccag
catgatccgctgctgctgcgttacgacaccatcattattgatgaagcccacgagcgcagc
ctgaatatcgactttctactcggctacctcaaacgtttgctccccaagcggcccgatcta
aaagtcatcattacctcggcgactatcgacgtggagcgctttgccaaacacttcggcacc
accaagacgcctgcaccggtggtggaagtcaccgggcgcacctaccccgttgaagtacac
taccggccgctggtgcgcgatgaggacgatgaagaagaccgcacgctgcaagagggcatt
ctgcacgcggtggaagagattgaagccgttgagcgtgaaaaaggctggttgcatggccct
cgtgatgtgctggtgtttttacctggtgagcgcgaaattcgtgaaaccgccgataccctg
cgccgcgccgagctgaaaggcactgaaatcctgccactctacgcgagactctccaacgaa
gagcagaaccgtgtgtttgctccgcaccgtggcaggcgcattgtactcgccaccaacgtc
gcggaaacgtcgctgaccgtgcctgggattcgctacgtgattgaccctggcctcgtgcgt
atcagccgctatagctaccgttccaagatccagcgactgccggtagaagcggttagccag
gccagcgccaaccagcgtaaagggcgctgtgggcggattgccgaaggcgtgtgcattcgc
ctctacagcgaagaggatttcctatcccggcccggctttaccgacccggaaatccagcgc
accaaccttgcctcggtgattctctcgatgctggggctcaagctcggcgatatcgaggcc
tttccgtttgttgatccaccggatagccgctttgttaaagacggctttcgactgctgttc
gagctgggggcggtggacgacaagcagcgcctttctccgcttgggcgtaagctggcgcgg
ctgccgattgacccgcgcttggcgcgaatggtgttggcgggtgccgaattcggcagcctt
cgcgatgtgctgatcgtcgtctcggctctagccatccaagacccccgcgaccgaccggcg
gataagcgccaggcggccgaccaagctcaccagcgctggcatgatccggattccgatttt
gtcgccttgctgaacctttggcacggcattgagaatgcccgtgaggcgctttcaggtaat
caactgcgccgctggtgccgcgagcactacatcaactacctgcgcatgcgcgaatggcac
gacaccttccgccaactgcgccaactgctgcgcgatatggatatcgacgtgcccgcgccg
ccgccccgtaatgaagacgagagcgaagaacaggcgcgtcaaacgcggcgtaaaacgtcg
ggcaaggtgcatcaggcgctactctcggggctgctctctaatctggggacgttggtggag
aaccgcgagtatctcggcgcccgcaatcgcaagtttatgattcatccaggctcagggttg
gccaagaagtcgcccaagtggatcatggcgttcgagatggtggaaacctccaagctgttt
gcccgcaccgtggccaaaatcgatccccagtggattgaaccccaggcgcagcacctggtt
aaacgcagctacagcgaaccgcattgggaaatgaagcgcgcccaggtagtggcctttgaa
caggtcacgctgtttggtctgccgattgtggcgcggcgcaaggtacattacgggccaatc
gcgccccaggagtcccgggagctgtttattcgccgtgcgctggtggaaggggaatttcac
accaaaggtgccttctttgctcataaccgcgcgttgatcgacgaagtcgaagcgctggaa
gatcgcgctcggcggcgagatattctggtcgatgaagacacgctctatgacttttacgac
cagcggatcccggcggagatagtcaacggcaagggctttgagcactggcgcaagcaggcc
gagcagcaagagccacaattactgcatttcgatattgattcacttaaagcgcgcgacgcg
gaggacgttacccaggcgcagtatcctgatcatttgattctggcgggcgtcgcgtatccg
gtaagctaccactttgaccccgaagccgaggatgacggtgttaccctgaccgttcccgct
gcaatgttgccccaggtgccggtgcatgctctggagtggttggtacctgggctgctgcgt
gaaaagtgtattgcgcttctgaagtcactgccgaaaagcatccgccgccaggtggtgccg
attcctgattgggtggatgcggcgctggaaaccctggtgcccgatcagcgcccgttaacc
gaggccttgggggagttcattcgccgccgtacatcgacgcgggtgcatcccgacgactgg
cgcctcgacgtgctcgaaccgcatctgatcatgaatattcgcgtggtcgatcacgcgggc
gaaaccttagggcaggggcgcgatctgcgtgctttagagcagcgctttgaagcggcagcc
agcgcaggcgcccaggcactggctgaacaggttagccaagagcccgctgtggccgggcta
cccaagacgccgctgcccgcttcgcgcgttaccacccaggcaggtattcgcgtagaggcg
tatcctgccctggtcgctgaaagcaggattgcgaaaaccagcggtcttgacgccagcgag
ttcaaggtggcgttgtttgatcaccctgcaaaagctgacgctgcccaccaggagggcatc
gctcggctggcaattgccaagctacctgaacaggttaaagcgattaaacaactgccgggt
gttgagaagtgcgcgctactgttcgccaaagtgggtagtaaacaagctttgatcgacgat
ctgctgcttgcggtgtttacccaggtgattgctcagcaccccctgccgcgctcggaaggc
gagtttagccagcgactaaacgctactcagggtcagcttgtagacgaagcgaaagcactg
ctggtacgcgtagaggccgcgctaaaagggcatctggcggtcagtaaggtgctcaaaggg
aagcttaattttgctctggcgctggtgtatagcgatgttagcgcgcagatgcagcgtctg
gtctatccaggctttattcgcgatgcgggcgcttggctggacgaatacccgcgctacacc
gaggcggcgctcattcggcttgaaaaagccgcccgtgagcgcggtcgcgatcaaatgatg
atgcaagatgtccaggcattagaggcccgttttgatgcccgccgcgaaagcgagcgacgc
gggcgggtggaagaccctgaattggtcgcttttggctggtggttacaagagcttagagtg
tcgctattcgcgcagcagttggggacgagtatggtggtgtcggtaaaacgactggaaaaa
cgctggcaagagatcactagcgtttag
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integrated database retrieval system
