Halomonas sp. A3H3: HALA3H3_800153
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Entry
HALA3H3_800153 CDS
T10226
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
haah Halomonas sp. A3H3
Pathway
haah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALA3H3_800153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haah03021
]
HALA3H3_800153
03019 Messenger RNA biogenesis [BR:
haah03019
]
HALA3H3_800153
Transcription machinery [BR:
haah03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HALA3H3_800153
Messenger RNA biogenesis [BR:
haah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HALA3H3_800153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
AAA_25
AAA_19
ABC_tran
AAA_22
AAA_16
AAA
NACHT
AAA_30
nSTAND_NTPase5
NPHP3_N
ResIII
ATPase_2
cobW
AAA_24
NB-ARC
nSTAND3
Viral_helicase1
Rad17
AAA_18
Spore_III_AA
AAA_17
NTPase_1
Mor
AAA_11
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
CDG54826
LinkDB
All DBs
Position
hala3h3:4140788..4141744
Genome browser
AA seq
318 aa
AA seq
DB search
MARKTLGLKVKREIDAKPADEVEDQFPNDPEKRFLNGVAIHPSPRIYLEPGSKQRTVRAM
DLITPIGMGQRGLIVAPPGSGKTTMLKHICQAVAEAHPDIKLYALLIDERPEEVTDFKRS
VSAEVHASSSDESYTHHVRMADKLLETARKQAGEGHNVMIVIDSLTRLSRVHNAEQRGNG
RTMSGGLDSRAMEIPRKLFGAARKIENGGSLTILATVLVDTGSRMDQVIFEEFKGTGNME
LVLSREVANQRIFPAIDIAKSSTRREELLIDAKDIEKVRTLRRGLTALKPVEGAQKLLAL
LDKYPTNAELLDAFLPDS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaaaaacactaggtttgaaggtgaaaagagagatagatgccaagcccgccgac
gaggttgaagatcagttccctaatgatcctgaaaaacgttttttaaatggcgtcgctatt
catccttccccacgcatttatttagaaccgggttctaagcagcgtactgtccgagcgatg
gatttgattacgcccattgggatggggcagcgagggttgattgttgcgccgccgggctct
ggcaaaacgacgatgttaaagcatatctgtcaggccgtggcagaagctcatcctgatata
aagctgtatgccttgctgattgatgagcgcccggaagaagtgaccgattttaagcgcagt
gtgtcggcagaagtacatgcctcgtcttcagacgaaagctacacacaccatgtgcgtatg
gccgataagcttcttgagacggcgcgtaagcaagcaggcgaggggcataatgtgatgatt
gtgatcgattctcttaccagactctcgcgcgttcataatgccgagcagcggggcaatggc
cgcactatgtcgggtgggctggatagccgagcgatggaaataccgcgaaaactgtttggc
gctgcgcgaaagatcgaaaacggcgggtcgcttaccattttggccaccgtgctggtggat
acgggaagccgtatggatcaggtgattttcgaggagttcaagggcacgggcaatatggag
ctggtgttatctcgggaagtggccaatcaacggattttcccggcgatagatattgccaaa
agcagtacgcggagagaagagcttttgattgatgcaaaagatattgaaaaggtaaggaca
ttacgtagaggtttgacagcgcttaagccagtagaaggagcgcagaagttgcttgcgtta
ttggataaatatcccactaatgccgagctattagatgcatttttaccagattcgtga
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