Halomonas sp. A3H3: HALA3H3_830032
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Entry
HALA3H3_830032 CDS
T10226
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
haah Halomonas sp. A3H3
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haah03032
]
HALA3H3_830032 (topA)
03400 DNA repair and recombination proteins [BR:
haah03400
]
HALA3H3_830032 (topA)
Enzymes [BR:
haah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HALA3H3_830032 (topA)
DNA replication proteins [BR:
haah03032
]
Prokaryotic type
DNA Topoisomerases
HALA3H3_830032 (topA)
DNA repair and recombination proteins [BR:
haah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HALA3H3_830032 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CDG54916
LinkDB
All DBs
Position
hala3h3:4224169..4226796
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AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSAEEKEEYKKRKSQDQLIRRMGIDPNNGWEARYEVLPGKEKVVAELKKLAEKADAVYL
ATDLDREGEAIAWHLRETIGGDDSRYKRVVFNEITKNAIQDAFKAPGALNIPRVEAQQAR
RFLDRVVGFMLSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHADLAS
PEGELVRFALVRQDGKAFKPTSEKDTLARIEQLRKAKLAITSREDKPTSSKPTAPFITST
LQQAASGRLGFSVKKTMTMAQRLYEAGYITYMRTDSTNLSKDAVEGVRSYIGEEFGERYL
PEAPNRYSSKESAQEAHEAIRPSSVERKASDLAGMERDAERLYELIWRQFVACQMTPAEY
LSSTLSVEVDGYELRAKGRVLKFDGYTRVMKPSGKNEDQSLPDLPKGTPMALEALDPQQH
FTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVKLENRRFYAEKLGDIVTER
LKESFPDLMDFSFTARMEDSLDEVAEGERNWQALLDAFYEEFREELAKAESEDGMRPNQP
VPTDIDCPSCGRHMQIRTASTGVFLGCSGYNLPPKERCKTTIDLIPGEEAVAEDAGEEAE
TNALRAKRRCPKCGTAMDNYLIDETRKLHICGNSPDCDGYEVESGKFKIKGYDGPIIECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLKSGEVAPPKMDPIPMPELACQKVDDHYVL
RDGASGLFLAASKFPKNRETRPPLVKELKAHADELPEKYHFILKAPSEDPDGRPAQIRYS
RKSKEQYVMTDEEGKATGWKAMFDAGKWHVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtcatcgtcgagtcgccagcgaaagcgaagacgattaacaaatat
ctcggcaacgatttcatcgtgaagtcgagcgtgggccacattcgtgacctgccgaccagc
ggctcaggtaaggcagcctccgaccccaaggagcgcgcgcgccaggccgcagcgacacgc
aagatgtcggcggaagagaaagaagaatataaaaaacgtaaaagccaagatcagctgatt
cggcggatggggattgaccccaacaacggctgggaagcccgctatgaggtgctgcctgga
aaagagaaagtcgttgccgagctaaagaagctggctgagaaggctgacgctgtctacctc
gcaacggatttggatcgcgaaggggaagccattgcttggcacctgcgcgagaccatcggt
ggcgatgacagccgttacaaacgcgtggtgttcaacgaaatcaccaaaaacgcgattcaa
gacgctttcaaggcgcctggcgcgctcaatatcccccgggtagaggcgcagcaggcaagg
cgtttcctggatcgcgttgtgggctttatgctttcgcctctactgtgggcgaaagtagcg
cgcgggctgtcggctggccgcgtacagtcagtcgcggtacgtctaattgttgagcgcgag
cgcgaaatccgtgcctttattcctgaagagttttgggatgtgcacgcggatttggcctct
cctgagggtgaactggtgcgttttgccctggttcgtcaggatggcaaggcctttaagcct
acctccgaaaaagacacccttgcgcgtattgagcagcttagaaaagccaagctggcgatt
acctcacgggaagacaaacccaccagttcaaagcccacggcaccctttattacctctacg
ctgcagcaagcggcgagtggccggttaggtttttctgtgaagaaaaccatgaccatggct
cagcgcctctatgaggcgggttacatcacctatatgcgtaccgactccaccaacttatcg
aaagatgcggttgagggtgtgcgtagctatatcggtgaagagttcggcgaacgctacctg
cccgaagcacctaatcgttatagcagcaaagagagtgctcaagaggcccatgaggcgatt
cgcccttccagtgtcgagcgtaaggcttccgatctggccggaatggagcgggatgccgag
cgtctctacgagctgatctggcgtcaatttgtggcctgccaaatgacccctgcagagtac
ctttcaagcacgctgagtgttgaagtcgatggctacgagctacgtgccaaaggacgtgta
ctgaagtttgatggttatacccgggtgatgaagcctagtggtaaaaatgaagatcagagc
ttaccggacttgccaaaaggtacgcctatggcactggaagcgctcgatcctcagcagcac
tttaccaagccagcaccacgctacaccgaagcaagcctggtcaaagagcttgaaaagcag
ggcattggccgaccgtcaacctacgcttcaatcatctcaacgatccaggatcgcggctat
gtgaagctggaaaaccgtcgtttctatgccgaaaagctgggcgatatcgtcaccgagcgg
ttgaaagagtccttccctgatttgatggacttctcgttcactgcccgcatggaagatagt
ctggatgaggtcgccgaaggcgaacgcaactggcaggcgctgctggatgccttctacgaa
gaattccgtgaagagctggccaaggctgagagcgaagatggcatgcgccccaatcagccg
gtgccaacggatatcgactgcccaagctgtggtcgtcatatgcaaattcgtaccgcttcc
accggggttttcctgggttgtagtggctacaatttgccgcccaaagagcgttgtaaaacc
accattgacctgattcctggtgaagaggcggtggccgaagacgcgggagaagaggccgaa
accaatgcgctgcgtgccaagcgtcgctgccccaagtgtggcacggcgatggacaactac
ctaatcgatgaaacgcgtaagctgcacatctgtggtaacagccccgattgtgacggctac
gaagttgaaagcggcaaattcaagatcaaaggctacgacggcccgatcatcgagtgcgat
aagtgcggctctgagatgcagttgaagtcaggccgctttggcaagtattttggctgtacc
aatagcgaatgtaaaaacacccgtaagctattgaaaagcggcgaagtggcgccgccaaaa
atggacccgatcccgatgccggaactggcttgccaaaaagttgacgaccattacgtgctg
cgtgatggcgcaagcgggctgtttttggctgccagcaagttccctaaaaatcgtgaaaca
cggccgccgctggtgaaagagctgaaagcgcacgccgatgagctgcccgaaaagtatcac
ttcattcttaaagcgccgagtgaagatccggatggtcgcccggcgcaaatccgctactcg
cggaagagcaaagagcagtacgtgatgaccgacgaggagggcaaggccacaggctggaaa
gccatgtttgatgccggtaaatggcacgtggaggacaaacgcaagtga
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