Halomonas sp. A3H3: HALA3H3_940004
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Entry
HALA3H3_940004 CDS
T10226
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
haah Halomonas sp. A3H3
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
haah03009
]
HALA3H3_940004 (rlmD)
Enzymes [BR:
haah01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HALA3H3_940004 (rlmD)
Ribosome biogenesis [BR:
haah03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HALA3H3_940004 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
TRAM
Methyltransf_25
Cons_hypoth95
Methyltransf_11
Methyltransf_23
Methyltransf_31
Methyltr_RsmB-F
DREV
RrnaAD
MTS
SAM_MT
TehB
Methyltransf_15
DNA_methylase
SurE
Motif
Other DBs
NCBI-ProteinID:
CDG55681
LinkDB
All DBs
Position
hala3h3:complement(4983988..4985385)
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AA seq
465 aa
AA seq
DB search
MAMLGKRRPPRPASGHSGLAGTPGGKTRHAATGDTSPMVIERLAHDGRGVAHSANGKTVF
VDKALPGEQVEVAIHLTRKRFDEAHIKSLLTTSELRVKPPCPHFGHCGGCDLQHLSVDAQ
RDHKREVVRDLFSRQGITLSEIGSIQGSDQGYRRRARLGVKVDSQGTTRLGFRAAHSHRL
VDIERCPVLVDPLQRLLTPLRELLGTLEAPRQVGHIELLATATAQVVLVRQLKEHTGDAE
RWQAFAQQQGVALGTWLGRETPTLHWHGAAPALEESLTVTGQPPLSLSFAPGDFLQVNAP
VNQQMVAQVIQWLAPKPGQKLLDLFAGIGNFSLPIAAAGAEVYAVEGNPAMVARIAINAK
RNQLMVSGQQADLNSAASVKELLTVHGGSDALVLDPPRSGAEVICQALAHHPVPRVVYIS
CDPATLARDAAHLVHAGYRVKQVAVADMFLHTAHMETLMLFEYGD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttgggaaaacggcggccgcccaggcccgcgtcaggccactctgggctagcg
ggcacgcctggtggcaaaacgcgtcatgcggctacgggtgacacatctcctatggtgatt
gagcgcttagcgcacgatggccgtggcgttgcccactcagccaacggtaaaacggtcttt
gttgataaggcgttgcccggtgagcaggtcgaagtggccattcatctcactcgcaaacgc
tttgatgaagcgcatatcaaatcgctgctgaccacctccgagctgcgcgtcaagccgcct
tgtccgcattttgggcactgtggcggttgtgatctgcagcacctaagtgtcgatgcccag
cgcgaccataaacgagaagtagtgcgcgatctgttttctcgccagggtataacgctaagc
gagatcggctcgattcaaggcagcgatcagggctatcggcgccgcgcacggctgggggtc
aaagtcgacagccaaggcactacgcgcctgggctttcgtgccgcccatagccatcgcctg
gtggatattgaacgctgcccggtgttggtcgatcccttacagcgcctattaacacctctg
cgtgagctgctgggtacgttagaggcgccgcgccaggtagggcacatcgaattattggca
acggcgaccgcgcaggtcgtgttggttcgtcagttaaaagagcacaccggggacgccgaa
cgctggcaagcctttgcgcagcagcagggagtggcgctgggcacttggttggggcgagaa
acacccacactgcactggcatggcgcagcgccggcgcttgaagagtcgctaaccgttacc
ggccaaccaccgcttagcctaagttttgcaccgggagattttttacaggtcaacgccccg
gttaaccagcaaatggtcgcccaggtcatccagtggttagcgcctaagccggggcaaaaa
ttactcgacttgtttgctggtatcggtaatttcagcctacccatagcggcagcgggtgct
gaggtttatgcagtggaaggtaaccctgccatggtggcgcgcattgcgattaacgctaag
cgcaaccaactgatggtcagcggtcagcaggctgatttaaacagcgctgccagcgttaag
gagctgttgaccgttcatggcggtagcgatgcgcttgtgctcgatccgccgcgaagcggc
gccgaagttatttgtcaggcgctggcgcatcacccggtgcccagggtggtctatatttcc
tgtgatccggcgacgcttgctcgggatgcggcacatcttgtgcatgcgggttaccgggtc
aagcaagtagcagtggcggatatgttccttcacactgcgcatatggaaacgctgatgctg
ttcgaatacggggactag
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