Halomonas sp. A3H3: HALA3H3_950008
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Entry
HALA3H3_950008 CDS
T10226
Name
(GenBank) ATP-dependent DNA helicase rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
haah Halomonas sp. A3H3
Pathway
haah03420
Nucleotide excision repair
haah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HALA3H3_950008
03430 Mismatch repair
HALA3H3_950008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haah03400
]
HALA3H3_950008
Enzymes [BR:
haah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HALA3H3_950008
DNA repair and recombination proteins [BR:
haah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HALA3H3_950008
MMR (mismatch excision repair)
Other MMR factors
HALA3H3_950008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
ResIII
PhoH
Motif
Other DBs
NCBI-ProteinID:
CDG55721
LinkDB
All DBs
Position
hala3h3:complement(5024865..5027075)
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AA seq
736 aa
AA seq
DB search
MKLTAEQQAVVNHQAGHARVAAVAGAGKTTTMAARVLHLLASGVPPKRILVLMFNRSAKD
DFQRRLAAMAPAGQALPDVRTFHSLGHRLTQSFCRWGALAPRQLLSADWQLERLLRQASI
NVLRDAVERRDAALEGDRLETLAHFCGLVKAEMITPEALYERLNFDPDTDYFPAAFAEAE
RLLEAEGVMTYADLLYRPLLALEADSALRGRVEGFLDHVIIDEYQDINAAQQRLLSVLVG
TRAEVMAVGDANQCIYEWRGAKPDTMLENFAATFGEATDYPLSTTFRHGHALALAANHAI
AANQRRPNQLCLAAANNPETRVSVGQGSRLLLDALMDWQAQGRAFNEASLLVRSWALSVP
FQLALLQAGIPFRLQREDRFVFRLPLVQALAGYLKLSRRPDLLRDPQQLLLLLSQPTPFV
ARERLQRLAHQLATTQQWPERHDPMLTALKPIQRRTLKKRWLLLCELPQLSAWPPAKLLR
HVVESIDAEKTLKRAAARRDKGEEDVRLLDVLIEQAQSVQDPDAFIELLERPVENQAGGV
LISTVHGAKGLEWPLVAVAGVNEEDFPHYSRDNPLSDERLEEERRLFYVAITRAQEQLLV
LHDGGVHRPSRFIAESAWQDSMRVASCLASTSAPAATLQVTSVGLVERYLVRLGRDDIAL
APAQVDESKAGYSAEANFYPGQRLHHAVFGVGEVAAVEGSASDPVIDVRFDQAGRRRLIA
RRAPIELLENGSTLAG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttaactgctgaacagcaagctgttgttaatcatcaggccgggcatgcgcgcgtg
gcagcggtggccggggcaggcaaaaccaccaccatggccgctagggtgctgcatctattg
gccagcggtgtaccgccaaaacgtattttagtgctgatgtttaaccgctcagcaaaggat
gattttcagcgtcgtttagccgcaatggcacctgccgggcaggcattgcccgatgtccgc
accttccactccctggggcaccgcttgactcaaagcttctgccgctggggggcgctagcg
ccgcgccagctattatccgccgattggcaattagagaggctgcttcgtcaggcaagtatt
aatgtactgcgtgatgccgttgagcgccgagatgctgctctggaaggggatcggctagaa
accttagcccacttttgcggcttggttaaagcagaaatgatcaccccagaggcgctctat
gagcggctgaattttgatccagacaccgactatttcccagcggcgtttgccgaagcagag
aggctattggaagcggaaggcgtgatgacttatgccgatctgctttatcgtccgctgttg
gcgctagaagcagatagtgctttacgtggtcgcgtcgaagggttcctcgaccatgtcatt
attgatgagtatcaggatattaacgccgcacagcagcgacttttatccgtgttggtgggc
actcgtgccgaggtaatggcagttggcgatgccaaccagtgtatttacgagtggcgcggt
gccaagcccgacaccatgctggaaaatttcgccgccacctttggcgaagcgaccgattac
ccactatcaaccaccttccggcacggtcatgcgttggcgctggctgctaaccatgccatt
gccgctaaccagcggcgtcctaatcagctatgccttgcagcggctaataacccggagacc
cgcgtctcagtcgggcaggggagccgtttgctacttgatgcgttgatggactggcaggct
caggggcgagcgtttaacgaagctagtttgctggtacgcagttgggcgctttcggtgccg
tttcaactggcgctgctacaagcagggattccatttcggcttcagcgcgaggatcgcttt
gtttttcgtctgccgttggtgcaggccttggcggggtatttaaagctgtcgcgtcgccct
gatcttctgcgcgatccgcagcagctgttactgctgctttctcaaccaacacccttcgtt
gcccgtgagcggcttcagcgtttggcacaccaactggcgactactcagcagtggcccgag
cggcatgaccccatgcttacggcgttaaagccaatccagcggcgcacgctgaaaaagcgc
tggctgctgctttgtgagctaccacagctgagtgcatggccacccgctaagttgctacgc
catgtggtggaaagcattgatgctgaaaaaacgcttaagcgtgcggcagcgcggcgggat
aaaggcgaagaggatgtacgcttactcgacgtgctgatcgaacaagcgcaaagcgtgcaa
gacccggatgcctttatcgaacttcttgagcgcccggtagaaaatcaggcgggtggtgtg
ctgattagcactgtgcacggggccaaagggctggagtggccactggtagcggtagccggt
gttaacgaagaagactttcctcactatagccgcgataacccgctcagcgatgagcggctt
gaggaggagcggcggctcttctacgtggcaattacccgcgcccaggagcagctattagtg
cttcatgatgggggcgtgcaccggccgagtcgctttattgccgaaagcgcctggcaggat
agcatgcgggttgcctcctgcttggccagtaccagtgcgcccgcggcgaccctgcaagtg
acatcggtgggcctggttgaacgctatctggtgcggctggggcgagacgacattgcgctt
gcgccggcacaggttgatgagtccaaagcgggttattcagcagaggcaaatttctaccct
ggtcaacggcttcatcacgcggtatttggcgtaggcgaagtggcggcggtggagggaagc
gccagcgacccggtcattgatgtgcgttttgatcaggcagggcgaaggcggctcattgcc
cgccgcgcacccattgagctactcgaaaatggctcaacgcttgctgggtaa
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integrated database retrieval system
